Detail information of AT4G27870_circ_g.3


General Information
CircRNA Name AT4G27870_circ_g.3
ID in PlantcircBase ath_circ_033237
Alias NA
Organism Arabidpsis thaliana
Position chr4: 13880822-13881499  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene AT4G27870
Parent gene annotation Vacuolar iron transporter (VIT) family protein
Parent gene strand +
Alternative splicing AT4G27870_circ_g.1 AT4G27870_circ_g.2 AT4G27870_circ_g.4
Support reads 22
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT4G27870.2:2
AT4G27870.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTAGAAACTACAATTCATGAAGAAGGTGCCCCTCTTCTGTTTGAAGGAAAAGACACTCCTGACA
CAAGCACGGCAGATTTTGGTCTGACCAAAGTAACAGgtggggcatcatctagtgtcttggaagc
taatccgccaccacgtgagtccattgtcccagtagttaatccatcgcgtggtaacctaagtcct
atgcgaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGGGGCATCATCTAGTGTCTTGGAAGCTAATCCGCCACCACGTGAGTCCATTGTCCCAGTAGT
TAATCCATCGCGTGGTAACCTAAGTCCTATGCGAAAGGATACGACAGGCTCAGCCGTTGTTCAG
CCTGATGCAGCCACTTCGATTCAAGGTACATATAAGCAATGTCACTCTTAGAAAGTGGAACCCA
TGTTCGTGTGTTGTAGTTTGAGCTTTTGACGTTGACAAGCAACTTTAATAAAAATAAAAAACGT
GATAGCCAATACTTCTTCTCTTATTTAGCTTTTGCGTCTCTCGTTTGACTTTTAAAGACTCCAG
CACTATTTTCTTAATATGATGGCAGTTGCAAAATCAAACGATACAAGCGAAATTGTAAACAATG
GAGCTATTGTTGGAGACGGGCAAAAGTTTCTGGCTCCTATGGTGGAGGAGCAAACACAGCAAAA
GATTGACAATGATGATTCTAGTACAGCAGACGGGAATCACACGTCAGACAAAGGACGTCTCTCC
CCAATTCAACCATCTCATGGCATGAGTATACTAAACACAGTGACTAACGGACCCGACGGATTGA
AAGTAGAAACTACAATTCATGAAGAAGGTGCCCCTCTTCTGTTTGAAGGAAAAGACACTCCTGA
CACAAGCACGGCAGATTTTGGTCTGACCAAAGTAACAG
Conservation Information
Conserved circRNAs NA
PMCS 0.156157621
Functional Information
Coding potential Y
Potential coding position 13880914-13881496(+)
Potential amino acid sequence MRKDTTGSAVVQPDAATSIQVAKSNDTSEIVNNGAIVGDGQKFLAPMVEEQTQQKIDNDDSSTA
DGNHTSDKGRLSPIQPSHGMSILNTVTNGPDGLKVETTIHEEGAPLLFEGKDTPDTSTADFGLT
KVTGGASSSVLEANPPPRESIVPVVNPSRGNLSPMRKDTTGSAVVQPDAATSIQVAKSNDTSEI
VNNGAIVGDGQKFLAPMVEEQTQQKIDNDDSSTADGNHTSDKGRLSPIQPSHGMSILNTVTNGP
DGLKVETTIHEEGAPLLFEGKDTPDTSTADFGLTKVTGGASSSVLEANPPPRESIVPVVNPSRG
NLSPMRKDTTGSAVVQPDAATSIQVAKSNDTSEIVNNGAIVGDGQKFLAPMVEEQTQQKIDNDD
SSTADGNHTSDKGRLSPIQPSHGMSILNTVTNGPDGLKVETTIHEEGAPLLFEGKDTPDTSTAD
FGLTKVTGGASSSVLEANPPPRESIVPVVNPSRGNLSPMRKDTTGSAVVQPDAATSIQVAKSND
TSEIVNNGAIVGDGQKFLAPMVEEQTQQKIDNDDSSTADGNHTSDKGRLSPIQPSHGMSILNTV
TNGPDGLKVETTIHEEGAPLLFEGKDTPDTSTADFGLTKVT(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017