Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G16610_circ_g.4 |
ID in PlantcircBase | ath_circ_002929 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 5677466-5677938 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | KNIFE, PcircRNA_finder |
Parent gene | AT1G16610 |
Parent gene annotation |
arginine/serine-rich 45 |
Parent gene strand | - |
Alternative splicing | AT1G16610_circ_g.2 AT1G16610_circ_g.3 AT1G16610_circ_g.5 |
Support reads | 2 |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G16610.1:3 AT1G16610.6:3 AT1G16610.7:3 AT1G16610.3:3 AT1G16610.5:3 AT1G16610.2:3 AT1G16610.4:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.191378699 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
5677918-5677468(-) 5677904-5677468(-) |
Potential amino acid sequence |
MSKLRWIELLIFQEDMVMLSSRQELMLRKLSSTWMVPKLMERLLKQRSHYHLVRKYLHPLNLSQ LHQKEMLQNLIMLLLTLRKMVVPGAQERATLVKLYMSKLRWIELLIFQEDMVMLSSRQELMLRK LSSTWMVPKLMERLLKQRSHYHLVRKYLHPLNLSQLHQKEMLQNLIMLLLTLRKMVVPGAQERA TLVKLYMSKLRWIELLIFQEDMVMLSSRQELMLRKLSSTWMVPKLMERLLKQRSHYHLVRKYLH PLNLSQLHQKEMLQNLIMLLLTLRKMVVPGAQERATLVKLYMSKLRWIELLIFQEDMVMLSSRQ ELMLRKLSSTWMVPKLMERLLKQRSHYHLVRKYLHPLNLSQLHQKEMLQNLIMLLLTLRKMVVP GAQER(-) MDRAVNLPRGHGYVEFKARADAEKAQLYMDGAQIDGKVVKATFTLPPRQKVSSPPKPVSAAPKR DAPKSDNAAADAEKDGGPRRPRESNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM DGAQIDGKVVKATFTLPPRQKVSSPPKPVSAAPKRDAPKSDNAAADAEKDGGPRRPRESNFGEV IHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDGAQIDGKVVKATFTLPPRQKVSSPPKPV SAAPKRDAPKSDNAAADAEKDGGPRRPRESNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAE KAQLYMDGAQIDGKVVKATFTLPPRQKVSSPPKPVSAAPKRDAPKSDNAAADAEKDGGPRRPRE (-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |