Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT3G07770_circ_g.14 |
ID in PlantcircBase | ath_circ_020375 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr3: 2482380-2482457 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | PcircRNA_finder |
Parent gene | AT3G07770 |
Parent gene annotation |
Heat shock protein 90-6, mitochondrial |
Parent gene strand | + |
Alternative splicing | AT3G07770_circ_g.4 AT3G07770_circ_g.5 AT3G07770_circ_g.6 AT3G07770_circ_g.7 AT3G07770_circ_g.8 AT3G07770_circ_g.9 AT3G07770_circ_g.10 AT3G07770_circ_g.11 AT3G07770_circ_g.12 AT3G07770_circ_g.13 |
Support reads | 2 |
Tissues | aerial |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT3G07770.1:1 AT3G07770.3:1 AT3G07770.2:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.254316452 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
2482389-2482454(+) 2482391-2482382(-) |
Potential amino acid sequence |
MKKRLVRKAFDMILGISLSENREVRIMKKRLVRKAFDMILGISLSENREVRIMKKRLVRKAFDM ILGISLSENREVRIMKKRLVRKAFDMILGISLSENRE(+) MIRTSLFSLKDIPKIISKAFLTRRFFMIRTSLFSLKDIPKIISKAFLTRRFFMIRTSLFSLKDI PKIISKAFLTRRFFMIR(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |