Detail information of AT2G36850_circ_g.20


General Information
CircRNA Name AT2G36850_circ_g.20
ID in PlantcircBase ath_circ_016945
Alias 2:15463669-15464389
Organism Arabidpsis thaliana
Position chr2: 15463669-15464389  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G36850
Parent gene annotation Callose synthase 10
Parent gene strand -
Alternative splicing AT2G36850_circ_g.16 AT2G36850_circ_g.17 AT2G36850_circ_g.18 AT2G36850_circ_g.19
Support reads 1/2
Tissues seedling;root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G36850.1:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAATAGTAGCAAATATATACAGCTGTAGAAACTCCTTGCCTGGAGGAAGTATGCAAATGTGAAT
TTGGAGGCCAGGACAACCAACCAAAACGCCACATACcgccaaaactggagcccacaagctaaca
atggtcaacgcatgatcgttagctgccaattttttaatgtagcagagccacaggtgtcagcaac
attttcaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGCCAAAACTGGAGCCCACAAGCTAACAATGGTCAACGCATGATCGTTAGCTGCCAATTTTTTA
ATGTAGCAGAGCCACAGGTGTCAGCAACATTTTCAAAGACAGTAATCAGTAACAAGTTCTAGTC
TGTATTATGGTTGATCAGATACAAATATAATATTATTCAGTTAAAATTCAACATATCTTGTAGC
CAATGAAGCAGACCTTCCTGACTAATTTGTTAAGTCCGTGTAGACACATTATATTTCTTTTAAG
TCAATTAACATCCAGCCAATTAATTCAATTTGAGCACTTAAGCATAAATACACTTACATTTTGA
GACAATATCATGCCATGAATATTGAAATGGAGGAAGATGAATGATAGTGTTGGTGGGTTTAACG
AGTGGTTTGATCTGCAACATGAAGAAGAACCGTCAGGTAATATCGTACACATGCTTAGTTAGTT
ACTTAATAAATATACATTTAACAACCAGGCTGCACGAGAACAACAACTTATACAATGGAGAAGG
AAAAAGCATTCAACATAGCAGTTGCCTATATACAGCCTCAGACATATCCCCTTGTTTTTTTAAT
GAGTACACCACAGGTGAATTCAGATATGAGAGATTTCAAATTCTATAATAGTAGCAAATATATA
CAGCTGTAGAAACTCCTTGCCTGGAGGAAGTATGCAAATGTGAATTTGGAGGCCAGGACAACCA
ACCAAAACGCCACATAC
Conservation Information
Conserved circRNAs NA
PMCS 0.152394603
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020