Detail information of AT1G29120_circ_g.5


General Information
CircRNA Name AT1G29120_circ_g.5
ID in PlantcircBase ath_circ_004755
Alias At_ciR5203
Organism Arabidpsis thaliana
Position chr1: 10176001-10176433  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ
Parent gene AT1G29120
Parent gene annotation AT1G29120 protein
Parent gene strand +
Alternative splicing AT1G29120_circ_g.1 AT1G29120_circ_g.2 AT1G29120_circ_g.3 AT1G29120_circ_g.4
Support reads 2
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT1G29120.2:2
AT1G29120.3:2
AT1G29120.6:2
AT1G29120.5:2
AT1G29120.7:2
AT1G29120.8:2
AT1G29120.4:2
AT1G29120.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGGCAATTCAAATCTTCTGCGAGGTAGGATTGCGGGGCTAGAACCGATTAATTTCATCACTTTG
GCAACACCTCATCTAGGAGTGAGAGGCAGAAAGCAGcaagttcttccaataccttcactaaaac
atttggcgggatcgatggagctggaaaacgactagcagaagaggtgagttttaatatcttcatt
tgcacctc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 317
Transcript exons: 10176001-10176071,10176188-10176433
CAAGTTCTTCCAATACCTTCACTAAAACATTTGGCGGGATCGATGGAGCTGGAAAACGACTAGC
AGAAGAGGTTAGACAAGTTGTCCAAAAGAGCAAGAGCTTAAAGAAGATTTCGTTTTTAGCCCAC
TCCCTCGGTGGCTTATTTTCCAGACATGCTGTTGCTGTTCTTTACTCAGCAGCAATGGCACAAG
TAAGTGATGTTGCTGTCTCTCAATCTGGCAATTCAAATCTTCTGCGAGGTAGGATTGCGGGGCT
AGAACCGATTAATTTCATCACTTTGGCAACACCTCATCTAGGAGTGAGAGGCAGAAAGCAG

Genomic sequence CAAGTTCTTCCAATACCTTCACTAAAACATTTGGCGGGATCGATGGAGCTGGAAAACGACTAGC
AGAAGAGGTGAGTTTTAATATCTTCATTTGCACCTCGTGTATAGGTAGGTCTTGGTTTTCTAGC
CCTTAACTTCAGTACATGAGCTGATTTCTGTTCCCATTCTGGATGTGAGAGAGGAATAGGTTAG
ACAAGTTGTCCAAAAGAGCAAGAGCTTAAAGAAGATTTCGTTTTTAGCCCACTCCCTCGGTGGC
TTATTTTCCAGACATGCTGTTGCTGTTCTTTACTCAGCAGCAATGGCACAAGTAAGTGATGTTG
CTGTCTCTCAATCTGGCAATTCAAATCTTCTGCGAGGTAGGATTGCGGGGCTAGAACCGATTAA
TTTCATCACTTTGGCAACACCTCATCTAGGAGTGAGAGGCAGAAAGCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.231133141
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015