Detail information of BGIOSGA003261_circ_g.1


General Information
CircRNA Name BGIOSGA003261_circ_g.1
ID in PlantcircBase osi_circ_008939
Alias Chr01:9875227_9878554(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr1: 10829178-10832505  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA003261
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA003261-TA:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCGTAATTATATTGAGGACCTATTGAAGAACATCAGAACTCAAGTTCTGCTCAAGCTTATTAAG
CCATATACTAGAATCAGGATTCCATTCATTTCACAGggtatggttgagacagaccctgagggtg
cacttgctggcttcgatcaagtagtacgtatggagcctgaaaaggctgaatggtaagccttata
taacattt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTATGGTTGAGACAGACCCTGAGGGTGCACTTGCTGGCTTCGATCAAGTAGTACGTATGGAGC
CTGAAAAGGCTGAATGGTAAGCCTTATATAACATTTTACTAGTTGATACCCTGCTGAAATATCT
TATTACGCATGTGGTAAGGAAGGTGTCATTTTGAACAAATTCTATGGTTGCAAAATGAAATAAA
ATATATAATTGAAAACATTCTTCTGGTGATGCCGTATTTTTAACTTTCACATTTAATATTTCAT
TCTTGAACGTCTGTATGCATCCTATTGGTTAGACATTAAAACCTTGCCTTCTGTGCGGTTCACA
AAAGATGTTGGATTTTATTGTCTTGTGGGCTTGCCTAAAGTGTTGGGCTCAGCAGAATGAATCA
AACACCCGAGGACCTTTAGTACCGTACCAAACCAGCAGCCTTCGCGCCAAGCGACGACCGCCCT
TGTCCCTTTCCTTTTTCCATTCTGCCTACTTCTTAGCTTTGTTCCGTCAGTCTAAGGCAAAGCT
TAAGTGGTTCGCCTACCTATCCATCTGTGCCACTGAGTACTCATTCAAAGGTAGAGAATAAGAG
GGGTGATATGGCTTTCACCATGTAAGATAGATTTAGTAAGAACTACATTTACTGGGGATCAATT
GTATCTATAATGATGTCGATTTTAGTTGCTGTATAGGTCCATCTACAATATAAAGTTCCTGGAC
ATATGAACTCTAAATTCTATTGGCATTCGACTGTCAACATGCCCATATGAGCTACTTGTTATCG
TTAAGCTTCAGGGACTCTGTACCTTCATGTACTTGTATGTTTTTTATGGTAGCACAGTGCCTGT
ATGCTGTTAAGACTTTCAATTAGATATAGTCTGTATTCTGATCCTACAAATGCCAAGATAATTG
CCCTAAAAATTTAAAAATAAATAAGGTTGCATGAACCGGTCTTTTATATATTTGAATGAATGTG
TGCATGGTGCAGTATTAGAAAAAAATTACAAACAACAAATTCTTGTTTACGTAGATCCATCCAC
AGAAGATTAACAATTTAAGATATAACATGACATCACTAGCACCTACTCTTTGTGCAGTAAAGAT
GTATGAAAATTGTTTATCACAAACCATCAGCTCGAGCCTTCTCAAAGTTCAGACCTAAGATCTT
AAAACCTCAGGTCATATTATGTTGACCAGGAATCCCCCCAGATTCCCAATATAGGATATGCTTG
AGCCACAAATAGAATTCTAACTGAAGTATTAGTGGCCTTTTTGGAGGGCTGCATATTTTGATGG
ACATCCTTTTTTTTCAATGGTAATGTGTTATAAGTTGTCAGTGAAATCAAGTGTATCTGTATCC
AACAGCCACTCATATTTTAGAGATCTGACGTCAGTTCTGTAACTCTTTTCTTTATAGGGGTTTC
AAAGCTCTGAAACAAACAGTGAAGCTGTATTATAAGCTTGGGAAGTACAAAGAAATGATGGATG
CCTATAGGGAGATGTTGACATACATCAAATCTGCTGTGACACGTAACTACAGTGAGAAATGTAT
AAACAACATTATGGATTTTGTCTCCGGATCAGCTAGTCAAAACTTCTCTCTTCTGCAAGAGTTC
TACCAGACAACACTGAAAGCACTTGAAGAGGCAAAGAATGAGGTTCAGTTTCTTGCCTTATCCA
AATTAGAATTTTATGTACCAAAAGATTGTTCTTTATACCTTGCTATTCTTTGCTGCGCAGAGAT
TATGGTTTAAGACAAACCTGAAGCTTTGCAAAATTTGGTTTGACATGGGGGAGTATGGCCGGAT
GAGCAAGGTGCTTATACAAGTTTCTCTAGTCAATTGGTTTTCTTTACATATTCTGCAGTCATTA
CTCTAATTATTTTGCTCGTAACTTCTTCCTGTAGATACTGAAGGAGCTGCATAAATCTTGTCAA
AGAGAAGATGGTTCTGATGATCAGAAGAAAGGCACACAACTTTTGGAAGTCTATGCTATTGAGA
TCCAAATGTACACTGAAACAAAGAACAACAAAAAATTGAAGGTAAGACATATTTGTCAGTCTTT
TTACACGTGATTATTTTGGATTACAGGTTACTACTGTTCAAGATTTTGTGTCAGTTTCTTGTTC
AATATTGCAGTACTCTAGCTGTATATTTGTTAAAAAACACAGTTGACTGCAGCCAGAACGCAGA
TATAAAGATAACTTTTCATCCTTCTGCTGTTTTGCCGGTTTATTCCTTTGACAATAATTTGTAT
AGGTTGATATGTTACTGATACCAGGATATTTGCCACTGAGTATACAATTATACATTTGCATAAT
ATGCTTGCCTGAAATCAGGTGGTATAGTGAGCACACAACTTCCTTGCTAAATTATTGATTTTCT
ACAGCTTTATAAAATAAAACCTACAAAGCTGATGCCTGTCTTTTGTACCTATTTTGGACAATAT
GTTTATAAGAGCATTGACTATATTTAGCCTATTTCATTTATAGTACTATGTTGACCCATATTGG
GTTCAAACCTTTCTCCTGCCTTAGGCAGTTAGCATGAAATGCACTTTCTGAAGTGAACCTCTGC
TGCAGGAACTATATACAAAAGCTCTTTCCATCAAATCAGCGATACCTCATCCAAGAATCATGGG
TATAATTCGTGAATGTGGTGGAAAGATGCACATGGCTGAGAGGCAATGGGCAGATGCTGCAACT
GATTTCTTTGAAGCATTCAAAAACTATGATGAAGCTGGCAATCCGCGGAGAATTCAATGCCTGA
AGTAATCAAATCATCTGCATTTCTTTTCCATGTTAATTTCGTATATTGATAAATTTAGAACTTC
CTCATCCTTTTTTATTGTACTGCATATTAGATATCTTGTTCTTGCAAATATGTTGATGGAATCT
GAAGTGAATCCCTTCGATGGGCAAGAGGCTAAGCCGTAAGACATTTGATGATTCCCTCATAAAT
CTTGTATCTTAATTTCATGCCACCCTGTAACTCCTTGATGCTTTCAGGTACAAAAATGATCCTG
AGATCCTCGCCATGACAAACTTGATTGCAGCATATCAGAAGAATGACATCATGGAATTTGAAAA
GATTCTAAAGGTCAGTGTTATTGAACATTATCCATCTTGCTATTTTCTGCAGCAATTCTAAGCT
AGTTATTCTGTTAATTGATTCTGGATTTCTGATGTGATTGTTACAAACAAAATTCAGAGCAACA
GAAGAACAATAATGGACGACCCTTTCATCCGTAATTATATTGAGGACCTATTGAAGAACATCAG
AACTCAAGTTCTGCTCAAGCTTATTAAGCCATATACTAGAATCAGGATTCCATTCATTTCACAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR394
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021