Detail information of BGIOSGA033457_circ_igg.1


General Information
CircRNA Name BGIOSGA033457_circ_igg.1
ID in PlantcircBase osi_circ_008713
Alias Chr10:24199309_24200827(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 21358258-21359777  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA033457_circ_g.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATGACATATCCACACTTGAAGCCACAAAAGCCATCTCAGCAGTATGTTCCAAAAGTTTTTGGC
TTCAAACTTCACAAGCAGTCATGACAAACTTGTACGgcagaagaatttgaaactgacagtgaag
attcagatgtcagtggttctgagggagaggacacatcttggatttcatggttctgcagtttgcg
cggcaatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCAGAAGAATTTGAAACTGACAGTGAAGATTCAGATGTCAGTGGTTCTGAGGGAGAGGACACAT
CTTGGATTTCATGGTTCTGCAGTTTGCGCGGCAATGAGTTCTTCTGTGAGATCGATGATGATTA
TATACAGGATGATTTCAACCTTTGTGGTCTGAGCAATCAGGTGCCATATTATGACTATGCACTT
GATCTTATCTTAGACATCGAGTCTTCTAATGGTGAGATTATTTTTCTCTTAAGAAAGCTACTAA
TTCATTATTTGCAGTAAAATACACTGTTCATATACCATTTATGAATGTCACTAGCTGCAACCTA
TATTTTTCATACCACTTTGTATCCTAACATACTTTTTTATGTTCATCAATCTCATTTTCTAAAG
GAGCCATTTCCAATAACCTATTTATAAACATTCCACAGTTCAAAGTCTGAAACATGTATTGTAT
ACACATACACCCTTCTAAGTCAGACCATTTGTATACAGGTGATGTGTTCACTGAGGAGCAAAAT
GAATTAATTGAGTCATCTGCAGAGATGCTGTATGGATTAATTCATGCAAGATATATCTTAACCA
GCAAGGGTCTGGCTGCAATGGTAATCTGCTAGCAGTTTGACCATATTTGATAGGCTATGCTTGC
TTCCTTGACTACTTGAATACTAAATTATTCTGCTTTTGCCTTCTGCAGTTGGAGAAGTTCAAGA
ACTATGACTTTGGAAGATGCCCCCGGGTATACTGTTGTGGCCAACCCTGTCTTCCTGCAGGGCA
ATCAGATATTCCTAGGTCTAGCACAGTGAAGATATACTGTCCAAAATGTGAAGATTTACATTAT
CCAAGATCCAAGTACCAAGGCAGTATCCTTTTGATTGTTTGTCTTAGATGTGTTTTATATGAAC
TGCTTTTTTTCTTAATAAATTGTACTCATATATGGAGTTAAAAACGAGGTGATATCTGATAGGG
CATAAATTAGAAATTGTGATTTCCTAAGCAGAATCAGACTTATTATTCGCAACAGCTAAAGCAA
AGCACAACACGAACATAGGCAGAATTATGAATACATGACCCATTTGTGCTGCTCTCTAAAACAC
ATCCTTTAAAAAATCAAACTACTGAGTTTTTATGCCACCTGTAATGGATTTCACCACTCTCAGT
TTCTCCAAGTTATAGGTTGGTTTTTAGCCAGCACTTGAAAAGGGGCTCTGTGTAGAGGATTCTC
ATTCAAACATGGTTTTCCTTTATTTTTTTTATGCGACTCATACAATTTGATTAGATTTGTTTGG
AACATAACCATGGGTAAACAAACATTGATTTTGTGCTATCATGAATATTGTGTTACTATTTTTC
TTGCACTTGTATCTCCTTTACTTTGCTAAGACATTGACGGAGCGTACTTTGGGACAACATTCCC
ACATCTCTTCCTGATGACATATCCACACTTGAAGCCACAAAAGCCATCTCAGCAGTATGTTCCA
AAAGTTTTTGGCTTCAAACTTCACAAGCAGTCATGACAAACTTGTACG
Conservation Information
Conserved circRNAs osa_circ_008037 osa_circ_008038
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021