Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G08465_circ_g.2 |
ID in PlantcircBase | ath_circ_001388 |
Alias | AT1G08465_C1 |
Organism | Arabidpsis thaliana |
Position | chr1: 2678103-2678754 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, CIRI, KNIFE, PcircRNA_finder, circRNA_finder, CIRI2 |
Parent gene | AT1G08465 |
Parent gene annotation |
Putative axial regulator YABBY 2 |
Parent gene strand | + |
Alternative splicing | AT1G08465_circ_g.1 |
Support reads | 4/2 |
Tissues | leaf, aerial, whole_plant/seedlings |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G08465.1:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.461680117 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
2678425-2678751(+) |
Potential amino acid sequence |
MPPIRPPEKRQRVPSAYNRFIKEEIQRIKACNPEISHREAFSTAAKNVSVPYASLFTLVTVRCG HCTNLLSLNIGVSLHQTSAPPIHQDLQPHRQHTTSLVTRKDCASSSRSTNNLSENIDREAPRMP PIRPPEKRQRVPSAYNRFIKEEIQRIKACNPEISHREAFSTAAKNVSVPYASLFTLVTVRCGHC TNLLSLNIGVSLHQTSAPPIHQDLQPHRQHTTSLVTRKDCASSSRSTNNLSENIDREAPRMPPI RPPEKRQRVPSAYNRFIKEEIQRIKACNPEISHREAFSTAAKNVSVPYASLFTLVTVRCGHCTN LLSLNIGVSLHQTSAPPIHQDLQPHRQHTTSLVTRKDCASSSRSTNNLSENIDREAPRMPPIRP PEKRQRVPSAYNRFIKEEIQRIKACNPEISHREAFSTAAKN(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | response to drought stress |
Other Information | |
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References | Chu et al., 2017;Pan et al., 2017;Zhang et al., 2019 |