Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d010455_circ_g.2 |
ID in PlantcircBase | zma_circ_009668 |
Alias | zma_circ_0002795 |
Organism | Zea mays |
Position | chr8: 115972951-115974529 JBrowse» |
Reference genome | AGPv4.38 |
Type | ue-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d010455 |
Parent gene annotation |
protein_coding |
Parent gene strand | + |
Alternative splicing | Zm00001d010455_circ_g.1 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d010455_T014:4 Zm00001d010455_T013:4 Zm00001d010455_T004:4 Zm00001d010455_T012:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.145182732 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
115972979-115974526(+) 115974496-115972978(+) |
Potential amino acid sequence |
MKNLNEAKYGFWGTLARKAKSFLDEDCSPEQYKSPRDDVHVGVQLPHSKQLPGETWKPETPPSQ KRSESITSSLTYIGGTIKNALEEGRTIVENKTADIIQETRKLNIRRKGAGLNTQGEAGHKIAQR HLPQNPLDHETQLKASRDVANAMAAKAKLLLRELKTVKADLAFAKERCAQLEEENKMLRESYDK GDNPEDDDLDSSGYEYTSMKNLNEAKYGFWGTLARKAKSFLDEDCSPEQYKSPRDDVHVGVQLP HSKQLPGETWKPETPPSQKRSESITSSLTYIGGTIKNALEEGRTIVENKTADIIQETRKLNIRR KGAGLNTQGEAGHKIAQRHLPQNPLDHETQLKASRDVANAMAAKAKLLLRELKTVKADLAFAKE RCAQLEEENKMLRESYDKGDNPEDDDLDSSGYEYTSMKNLNEAKYGFWGTLARKAKSFLDEDCS PEQYKSPRDDVHVGVQLPHSKQLPGETWKPETPPSQKRSESITSSLTYIGGTIKNALEEGRTIV ENKTADIIQETRKLNIRRKGAGLNTQGEAGHKIAQRHLPQNPLDHETQLKASRDVANAMAAKAK LLLRELKTVKADLAFAKERCAQLEEENKMLRESYDKGDNPEDDDLDSSGYEYTSMKNLNEAKYG FWGTLARKAKSFLDEDCSPEQYKSPRDDVHVGVQLPHSKQLPGETWKPETPPSQKRSESITSSL TYIGGTIKNALEEGRTIVENKTADIIQETRKLNIRRKGAGLNTQGEAGHKIAQRHLPQNPLDHE TQLKASRDVANAMAAKAKLLLRELKTVKADLAFAKERCAQLEEENKMLRESYDKGDNPEDDDL( +) MTRVIIQKMMIWIVQAMNTRP*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |