Detail information of Os06g0611900_circ_g.4


General Information
CircRNA Name Os06g0611900_circ_g.4
ID in PlantcircBase osa_circ_031358
Alias NA
Organism Oryza sativa
Position chr6: 24400143-24400675  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method circRNA_finder
Parent gene Os06g0611900
Parent gene annotation Similar to Glycine decarboxylase P subunit. (Os06t0611900-01);Si
milar to Victorin binding protein. (Os06t0611900-02)
Parent gene strand -
Alternative splicing Os06g0611900_circ_g.1 Os06g0611900_circ_g.2 Os06g0611900_circ_g.3 Os06g0611900_circ_g.5
Support reads 2
Tissues leaf
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os06t0611900-01:3
Os06t0611900-02:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATTAAGCTCATATAAAAGAATGGTTGGTACAATGCTAAGGAATATAGTATGTGTTTTAGTGTT
TTACCTTGCTTTCACTTTCAGTTGGTTCAATCATAAtcgctcatcagaagttggggcgggtgag
gagcactctgcacaacaacggaacaaaacaagaatcacatgtcaacatcctggtgatgcaagag
ctatgcag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TCGCTCATCAGAAGTTGGGGCGGGTGAGGAGCACTCTGCACAACAACGGAACAAAACAAGAATC
ACATGTCAACATCCTGGTGATGCAAGAGCTATGCAGCCGCCTCATGTTTGAACTTTTGAGTTTG
GACCATGCTAATGTATCTCCAAAATTGCATACAGCATGAGGACTAGGATTGAACGGGGTCTACT
AACATCTTATATAACCTATAAGAATTGGGGGTAAGAACATAATTGCCCGTATATAGATAGATAG
GTGTTACGAACTTACAATCTAATATATGAAAACAGATAGCGGTATAGTAGTATTTTACCTTGAG
GACGTTGTTGTTCACATCTGCTTTGCCACTTTCTATCTCTGCAATTTCTTCCCTGATTGAGATT
AGAGCATCACAGAACCTATCTAGTTCGGCCTGCGAGATAATTGATGTGACATTAAGCTCATATA
AAAGAATGGTTGGTACAATGCTAAGGAATATAGTATGTGTTTTAGTGTTTTACCTTGCTTTCAC
TTTCAGTTGGTTCAATCATAA
Conservation Information
Conserved circRNAs NA
PMCS 0.169233568
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017