Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d023715_circ_g.2 |
ID in PlantcircBase | zma_circ_010170 |
Alias | Zm10circ00014, GRMZM2G028307_C1 |
Organism | Zea mays |
Position | chr10: 16697292-16697806 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d023715 |
Parent gene annotation |
Melibiase family protein |
Parent gene strand | + |
Alternative splicing | Zm00001d023715_circ_g.1 |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d023715_T017:2 Zm00001d023715_T021:2 Zm00001d023715_T014:2 Zm00001d023715_T009:2 Zm00001d023715_T005:2 Zm00001d023715_T003:2 Zm00001d023715_T004:2 Zm00001d023715_T001:2 Zm00001d023715_T013:2 Zm00001d023715_T010:2 Zm00001d023715_T019:2 Zm00001d023715_T008:2 Zm00001d023715_T012:2 Zm00001d023715_T020:2 Zm00001d023715_T006:2 Zm00001d023715_T016:2 Zm00001d023715_T002:2 Zm00001d023715_T007:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.268064566 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
16697324-16697351(+) 16697410-16697421(-) 16697388-16697715(-) |
Potential amino acid sequence |
MLPPRGWNSYDSFSWIVDENAYLQNAQIMTEKLLPHGYQYAVIDFLWYRKYVDGAYTDSYGFDN IDEWGRPFPDLQRFPSSRVDRGFSQIASKVHGMGLKFGIHLMKGISVQAVNADTPILDIKTGYF RGKQRTGHVASKRVELV*(+) MICAFCRYAFSSTIHEKESYEFHPLGGNMACSLFASEVPRLYVQDRRVSINSLHTYPFHQMDAK FQAHSMNLTGNLTEPSINSRRWKSLKVRKRSTPFINVVKSIGICVCTVNIFPVPEEINNCILIS MWE*(-) MHFRLQSMKKNHTSSTLLEATWPVLCLPRKYPVFMSKIGVSALTACTLIPFIKWMPNFKPIP*( -) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Han et al., 2020;Zhang et al., 2019 |