Detail information of Zm00001d004559_circ_g.1


General Information
CircRNA Name Zm00001d004559_circ_g.1
ID in PlantcircBase zma_circ_001099
Alias circ464
Organism Zea mays
Position chr2: 118073878-118076546  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method CIRI
Parent gene Zm00001d004559
Parent gene annotation Leucine-rich repeat protein kinase family protein
Parent gene strand +
Alternative splicing Zm00001d004559_circ_g.2
Support reads 3
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   GT-TA
Number of exons covered Zm00001d004559_T003:2
Zm00001d004559_T026:2
Zm00001d004559_T021:3
Zm00001d004559_T020:4
Zm00001d004559_T027:4
Zm00001d004559_T001:4
Zm00001d004559_T028:3
Zm00001d004559_T010:4
Zm00001d004559_T025:4
Zm00001d004559_T009:4
Zm00001d004559_T007:4
Zm00001d004559_T002:4
Zm00001d004559_T024:3
Zm00001d004559_T022:4
Zm00001d004559_T017:4
Zm00001d004559_T006:4
Zm00001d004559_T011:3
Zm00001d004559_T023:4
Zm00001d004559_T004:3
Zm00001d004559_T016:4
Zm00001d004559_T018:3
Zm00001d004559_T005:3
Zm00001d004559_T008:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTCAACATACTATAAAAGTAGCTTGACACTGCTAAGCCTATTTTCAGATGCTGGTTTACGAGT
ATATGCCCAATGGAAATCTGCGTGATCATCTTTCAGgattacatggaaacccagtatgcattgg
gcaaaaccaactgaatatttctcagtattgtcagtcaggaacatatgttgcacgtggaggttca
gcagataa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATTACATGGAAACCCAGTATGCATTGGGCAAAACCAACTGAATATTTCTCAGTATTGTCAGTC
AGGAACATATGTTGCACGTGGAGGTTCAGCAGATAACAGTACAGTTTGTCCACCATGCTCTAGC
GACTTTCCTTTTGAAAGAATACCGATGTCACCAATACCATGCTCATGTGTCGTTCCAGTTTATG
TGGGTTACCGGCTTAAGAGTCCTGGGTTCTCAAATTTCATTCCATACGAATCCCAGTTCCAGCA
GTACTTAACATCTGGGCTTTCACTGTCATCGTACCAATTAGAAGTTTCTACTTTTATGTGGGAA
GAAGGCCCAAGGCTGAAGATGGACCTGAAAATATTTCCAAATAACACTCCCTTTTTCACTGTAA
GTGAGGTGTTCAGGCTTAATGGTATGTTCACAGCTTGGCAGATTGCAGACTCTGATATATTTGG
CCCATATGAACTTATCAGCTTCAACCAAGGGTGGTACAACACAAGTATGATATATCTTCTCTTA
TTTTTATTTCTGTATTGTCCATTTATTGGAGGACTCTATTAGAGCATTTATGAGTTTTTTTCTG
AACGCAATTAAGAAAAAAATAGAATGAACTCGGTTTGTAAGGAAAGCCAGGCCTATAAACCTCG
CAGCTCACAATTTATTGAAGGAAAATTAACGAAAAACTAAACACGACAACCCTGACGATTAACT
CTAAGAAACCCACCACACGTCATTGTTGCCAAGCTTATCACACAAAAGCGATAAGCAGGTCTGA
CTTCCACGGCCGAAGCCCTAACATGTCACCACCTACTCACAACAAGCCTATTAGCCTCCAAAAG
TGGACACACCATGTCACCACTCAACGCTAGATGTGGCATGCGCTGTCCACCCGCAGCAGACCAC
AGCCTGGATGAAGCCATGGCCTGCACCGGCGACCAGCGACGTCGGGCCAGATCTGCAACCATCC
AGCCACCAAACAACCGCAGCTCGCCGGACTTCCGGCCAGCAGCAGCGGCAGCACGATCTGGAGT
GAATGACAACATTTATGAGTTTTAACCATCATAAGGATGCCTGATGCAGTTAAACTTGAATCTA
ACCAGTAACTGTGATAACGTATGTGTGAGCAAGTTATGAAAAGATGTTTATAATAATAGGCCTA
TCTACTCTTGTGCTTAGCTTCTTAGCTGCTACTCCACATTGGTAAGAAAATTGCCTCTGTAGAA
TGTCCATTGGTGAACGTGTTAAGTTTGGTCATTTGGGGCGGTGGTGATTGGTGGATACCGAACT
CAACTGCAGGGTTAATTCTTTTAAAATATTTGGAGGTTTACAGTTTTCTCATAAATATTTTATA
TTATAGAAACATTTTTACAAAAACCTTCAGGTATGAGCCTAAAAGTTACAATATTTGAGGTTTG
AATGTGTTATGGCACTGATATGACGCTGTTGGTCAAACATGCCTACAAAAGTTAGTGTTATGGA
AAAGTTTACCGACCATTTTTTGCATATTCTAGAAAATCCATTTGAATTTCCACAATCTTAGCAA
GTCTAGAAGATAAAGGTCTCACCTGTTCTTATGCTATCTTTCCAGTAATACCACAGGGTACAAA
GTCTGGTCTGAGTACAGGTGCCATTGTTGGGGTGGTCATGGCGGCATTTGTTGCAGCTGCCATT
CTTTCATCCCTCGTTACTATCATCATATTGCGGAGACGCTCAAGACAGTCTTCTTCAAATAAAC
GCACCGGTAAACACTCCACCTCTACTTTCTATGTTTTTAATAAACAATTAAAAAAGTTAGAATT
ATCATTTTTTTCTGAAAATTGTAAGTGTTCCAATTTCCCTCCTCTGCATTAATTTATTTACTAT
TTTAGTAGGACTTACTGTCCATAAAACAATGCCCTTTCCATACAAGTTATGTACTGTTCAAATG
ACAAGCTTTTATTGTCATTGTAGCGAAAAGAATTTCAATGAAAATTGCTGGTGTAAAAGACTTC
ACTTTTGATGAATTGTCACATTGTACACATGACTTTAATGATTCAACACTAATTGGCCAAGGAG
GGTATGGCAAGGTATACAGAGGTGTGTTGGCTGATGGAATAGTAGTAGCAATAAAGCGAGCACA
GCAAGGGTCTCTTCAAGGTTCTAAGGAATTCTTCACAGAGATAGAGTTGCTATCGAGGCTGCAT
CACCGTAATCTAGTCTCTTTGCTCGGTTATTGTGATGAAGATGATGAACAGGTAGTGCTTTCAA
ATCCTTTTTCTTTGTTCCCCCCTAAAGAAGACAAATTTTAAACACAATTTCATGTTGGTGATTA
TTCGATTTGGTTGCTTCTTTTGAATTGAGTTATGAAAAAGTTGACTTTTTTTTGGTTCTAATGC
ACTTGTGGAAGGGCACATAAACACATGTTTCTGCTACCGTCCTATTTCTTGTAGATTGATTCAA
TGAAGTGTTCATTTCTTAGTTAACAAGCATTCCTTGTTGGTAGGTACTAATGCCTCTTTTGTGT
AGAACTTTCTTCTTGATATCCCATCTCCTTGTAAATCATGATGTACATGAAGTTAGTAGTAGGT
ATACCTTCCATTCAACATACTATAAAAGTAGCTTGACACTGCTAAGCCTATTTTCAGATGCTGG
TTTACGAGTATATGCCCAATGGAAATCTGCGTGATCATCTTTCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.047959951
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b