Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d036624_circ_g.1 |
ID in PlantcircBase | zma_circ_008973 |
Alias | zma_circ_0002525 |
Organism | Zea mays |
Position | chr6: 95236162-95237076 JBrowse» |
Reference genome | AGPv4.38 |
Type | ue-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d036624 |
Parent gene annotation |
Twinkle homolog protein chloroplastic/mitochondrial |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d036624_T001:5 Zm00001d036624_T004:5 Zm00001d036624_T002:5 Zm00001d036624_T003:5 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.146639226 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
95236484-95237073(+) 95236839-95236201(+) 95236204-95237006(-) |
Potential amino acid sequence |
MISAETLRRNKVMQRNWNNKISIAFTYRRDGALVGCKYRAVDKTFSQEANTEKIFYGLDDIKRA HDVIIVEGEIDKLSMDEAGYRNCVSVPDGAPPKVSSKIPDQEQADGVTNISQGKSGIESETDQE VEAKKAANKVYRKISDEDLNLEPLCDELVEYFATRMISAETLRRNKVMQRNWNNKISIAFTYRR DGALVGCKYRAVDKTFSQEANTEKIFYGLDDIKRAHDVIIVEGEIDKLSMDEAGYRNCVSVPDG APPKVSSKIPDQEQADGVTNISQGKSGIESETDQEVEAKKAANKVYRKISDEDLNLEPLCDELV EYFATRMISAETLRRNKVMQRNWNNKISIAFTYRRDGALVGCKYRAVDKTFSQEANTEKIFYGL DDIKRAHDVIIVEGEIDKLSMDEAGYRNCVSVPDGAPPKVSSKIPDQEQADGVTNISQGKSGIE SETDQEVEAKKAANKVYRKISDEDLNLEPLCDELVEYFATRMISAETLRRNKVMQRNWNNKISI AFTYRRDGALVGCKYRAVDKTFSQEANTEKIFYGLDDIKRAHDVIIVEGEIDKLSMDEAGYRNC VSVPDGAPPKVSSKIPDQEQ(+) MMLSLWRVKLISCPWMKLVIVIVSVCQMVHHPKCPVRFQTKNRLMELPTYPKERVA*(+) MPLFPWDMLVTPSACSWSGILLDTLGGAPSGTLTQLR*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |