Detail information of BGIOSGA010533_circ_g.1


General Information
CircRNA Name BGIOSGA010533_circ_g.1
ID in PlantcircBase osi_circ_013146
Alias Chr03:18227656_18228463(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr3: 19225579-19226383  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA010533
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA010533-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGAATGCAGTGAAATCATTGCATTTCCCTCCATTTGAATGGCACAACCATACATCTCCTTTGAA
GTCATATGTATCAAGCATCAGCGCGCGGACACCGTTccttatagtaatcaactgcgaggaaatt
agcccatcgattcccagctgcaccgtagcatgtgttcaccatgtcagtaaggctcttggagtgc
tgcaggca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTATAGTAATCAACTGCGAGGAAATTAGCCCATCGATTCCCAGCTGCACCGTAGCATGTGTT
CACCATGTCAGTAAGGCTCTTGGAGTGCTGCAGGCATGCGGTTACCTTCACCGGGACCGATGGG
AAGTAGTTCACCAGGACTAACGACTTGGTTTTGTCATTCAGAGGTGCAGATTCTGCACGATTTG
AGCATTTGCCAGCATCCATACCATCATCTCCGTCTGTGATCAACAGAATTTGTGAATCCCTTGC
ATGCAACAGGAATGTTGAACGGCAAAAAAAATATATAGAGAGTAGAGGATGTGATGTCTCACAG
TGTTCTCGACCATGTAGTTCCACTGGTATGCGATTCCTTCAGTAGCCTGCTTGACCTGATGGAG
GTGAACACAAGGAGGCGCTGGTGCTCGCAACCATGTCACTGACAAGAGGCCAATCCTTACCTTT
CTGTGGCATTTTCGACACGGGAAACCAGTACTTCATCAGACCAGAGGCCTTGAACACGTTTGTC
AGGCCATTCGGTGCATGCACGTAGTCTTCCAGGATCAACGTGACGATTTCAGATGGATTGGCTC
CAAGGAAGGCTTCGATTTCCTTGAATGTGTCCAATGCAGGTTCCTGCAATTACCAACAGAATGA
TAAAACATTTGGCTCTGAAACTCTGTCCGTCATGACAAGTGAGATGGCTACATCCAGTTCACTC
ACGAATGCAGTGAAATCATTGCATTTCCCTCCATTTGAATGGCACAACCATACATCTCCTTTGA
AGTCATATGTATCAAGCATCAGCGCGCGGACACCGTT
Conservation Information
Conserved circRNAs osa_circ_020309
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021