Detail information of Os06g0214850_circ_ag.1


General Information
CircRNA Name Os06g0214850_circ_ag.1
ID in PlantcircBase osa_circ_042282
Alias NA
Organism Oryza sativa
Position chr6: 5838431-5840374  JBrowse»
Reference genome IRGSP-1.0.38
Type   ag-circRNA
Identification method CIRI-long
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os06g0214850_circ_ag.2
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGTGTAACATAGACAATGTTATTGTCATGGGCTTGTTAGCATGCTACTTACTGCGTTTTGCAGG
GAGGCAAGTGAATCAACTGCAGTCTTTGTGAACCAAggtggggtcgccgccgaggcggaagacg
cggccgctcttgtactggcagaggtagggctggaagtcgaaggcgacctcggagtcgggatcca
tggcggat
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 196
Transcript exons: 5838431-5838577,5840326-5840374
GGTGGGGTCGCCGCCGAGGCGGAAGACGCGGCCGCTCTTGTACTGGCAGAGGTAGGGCTGGAAG
TCGAAGGCGACCTCGGAGTCGGGATCCATGGCGGATGGGGAGCGGTTGGTGGCCGGATCGGGAG
ACGGAAATGAGTTGGCCACTGCGTTTTGCAGGGAGGCAAGTGAATCAACTGCAGTCTTTGTGAA
CCAA

Genomic sequence GGTGGGGTCGCCGCCGAGGCGGAAGACGCGGCCGCTCTTGTACTGGCAGAGGTAGGGCTGGAAG
TCGAAGGCGACCTCGGAGTCGGGATCCATGGCGGATGGGGAGCGGTTGGTGGCCGGATCGGGAG
ACGGAAATGAGTTGGCCACCTGCAACAAATCGAGCTGGAAACTTAAAAAGAAGTCTAGTTCACT
TCAAGAAGTTCAACGCGGGGGAGAGAGAGATAGTGGGAGCGTGGTTGGTGAGGGTAGAGACTTG
CGGCGAGTGGCAACGCCGCTTTCTCAACTTTTTATTTCCCCATTTGGTGATCGGTGAACAACTT
TTATAATTATTTTCCCCATAGTATGACCCGCTCAAAAACTAATTACTGCTCCCTCCCTTTCATA
TTATAAATCATTTTGATTTTTTTTCATAATTAATTTTTTTAAAAATTTATAGAAAAATAATTAA
TTTTTTTAAAAATTTATAGAAAAAACTAGTACTCCCTCAATACTCATAAAGGAAGTCGTTTAGG
ACAATGTTTAAATCAAACCTTAGGAATATAAATCATAAATAACTCTCAAGTTGTTAAGTTTGAA
AATATAAAAATTATATGTATAGATTTTTCTTGAAAAATACTTTCATAAAAATATACATATATCA
CTTTTCAATATATTTTTATAGAAATAAGAAATCAAAGTTGTATTTTAGAGACCGTGTCACTATC
CTAAACGATTTCCTTTACGAGTATGAAGGGAGTATCATTTACAATACCAAATTAGTTTCATTAA
ATATACTAGTAATATGTTTGTGTTGAAAATATTACTATATTTTTCTATAAACTTGATCAAGTTT
GATTAGAAGAAAAACTAAAGTGGCTTACAATATAAAACAAAGGAAGTACTAGTATTAATAAAGA
CTATTTCTTCTCGTGTTTATTTAGATGATGTGAGAACCGATTACGATCGACTTCTGTTCAGTGA
GGTCGCCGCAACTCTTAAGAGCTGAACAAATACAAAGGCATTCACCGAATAAATCGGTGCAAGT
TGGTGACAGTTCTTGAAGATGGGTGGGCGATGGCACTAGTTGCAGGCTTGCAGCTATCCTTGGA
CTTTTTTTTTTGCATGAAGTTCACAGCCAGCCCTGTCTGGATCCCCGACCGACTATCCAGCATG
GTACACAAAGACAACAGTATTTTGACGGTAAGGAGATTGATTAACTGATAAAAACGGTTGGTGA
ACTTGGCATCATCCATTTGGTCAGACTGCCAACGACCCAAAAGCCAACAGAGCAAAAAGGAACG
GCTAGAAGTTGAAACTTAGGCTGTGTTTAGTTCCACGTCAAAATTAGAAGTTTAAAGAAATTGG
AACGATGTGATAGAAAAGTTGGAAGTTTGTGTGTATAAGAAAACTTGATGTGACGGAAAAGTTA
GAAGTTTAAAGAAAAAAGTTGGGAACTAAACAATGCCTTAGTGGTTTTGGTGGTTGGGGGCTTA
AGGGAAGACAGCCACAACACCGCCAGTTAACTGAGGCGGGTTAAAGGGCTCAAACCAGAGATTT
TATAGGATTTTCATAGGAATTTATCCAAACTCCCCTAAAAATCCTTATAAATTCCTCACTTCCA
AAGGATATATTAGTTCCAGGCTACCCCCTTAGAGACCACCATATGGAAATCCTTGTACTACCAA
TGAGTAATTTAAGCACACGTAGCAACTGAAGAGCGTGAAAACTCAATTCAAGAGATGTAAAGTA
TGGAAAAAAAAAACCCGCTACCTGATATGATTTTCAAATTCATACACAGTATTGATCTCAAAAT
GTTCTCCAGATCATTTGACTCAGAGGTTGATACTTTCCCAGTTTCCATACATAGTGTAACATAG
ACAATGTTATTGTCATGGGCTTGTTAGCATGCTACTTACTGCGTTTTGCAGGGAGGCAAGTGAA
TCAACTGCAGTCTTTGTGAACCAA
Conservation Information
Conserved circRNAs NA
PMCS 0.107872647
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study