Detail information of AT2G04400_circ_g.2


General Information
CircRNA Name AT2G04400_circ_g.2
ID in PlantcircBase ath_circ_012781
Alias At_ciR4210
Organism Arabidpsis thaliana
Position chr2: 1531593-1533014  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ
Parent gene AT2G04400
Parent gene annotation Indole-3-glycerol phosphate synthase, chloroplastic
Parent gene strand +
Alternative splicing AT2G04400_circ_g.1
Support reads 4
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G04400.1:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATATATTTGACTTTCAATTAGGTACATGATGAGAGAGAGATGGGTCGTGTACTTGGAATAGAAG
GAATCGAGCTTGTTGGCATCAATAACCGAAGTCTTGtcggatttgaaggaaagcttagctgtgt
cttcttcatcagtagaggataaaggaaatgttcttagaatcaaggaatgggaagtagagatgta
tcaggagg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TCGGATTTGAAGGAAAGCTTAGCTGTGTCTTCTTCATCAGTAGAGGATAAAGGAAATGTTCTTA
GAATCAAGGAATGGGAAGTAGAGATGTATCAGGAGGAATTAGCTATTAGTCAAGGTATTAGGAT
AAGGAGAAAACCACCAAGTAAGGCTCCTTTGGGATACTCTGGACCATTTGAGTTGAGATTGCAT
AACAATGATGCTGATTCTCCTCGTAATATCTTGGAGGAGATCACATGGTACAAAGACGTAGAAG
TTTCCCGGGTAAAGACTTTCTTTTTACAAGACTTTTCTTTTCAGAGCTTTGTGTGAGTTTTTCT
TAATGGTGGTTGTCTTTTGGTTCTTCAGATGAAGGAGCTAAATCCGCTTGACGTGCTGAAGAAA
GCTGTAGAGGATGCTCCTCCTACTAGGGATTTTGTTGGGGCTCTTAGGATGGCTCATAAAAGAA
CTGGCTTCCCTGGCTTGATAGCTGAGGTTAAGAAGGCTTCTCCAAGTAGAGGAATCTTAAAAGA
GAATTTTGACCCGGTATGTTATACTGGTTTCTGTTTCTTTCCTTTATGACTTTAGATCGTGTTC
TCGAATTGAGTTAGTGGACTCTGATTAAGCGAGTAAAGGTTGATTCTTCAATGGATAAAAGATT
GGAACATTGAGCATTGTAGTCTTTGGCCTTGGGAAATAGATCAACATTTTTCTTTTTATTGTGA
ACAGTTTCCAATATGATTTGCTATTGTTCTTTTATCTAAACCCGCAAGGTGTTCATGATTCCTC
TGGCTGTGATGTTAATGCTTATCGTCTTACAGGTCGAGATTGCTCAAGCTTATGAAAAAGGCGG
AGCAGCATGCCTCAGCGTTTTGACAGACCAGAAGTATTTCCAGGTTCACTTGTGTATTCAGTTG
CAGATATCTTACTCACATTTTCAACAAGTTTTTAACATTTGTAGTTCTTATCTTGATGTTGTTC
AACAGGGAGGCTTTGAAAACTTGGAAGCAATAAGGAGCGCTGGTGTGAAGGTATTTTCTTAACA
AATTCTGGTGCTTTTGGTGCGTTATTATCAAAACACTTTGTGTAATCCATGTTTTTCAAATTAT
TGCAGTGTCCACTATTATGCAAAGAGTTTGTTGTAGATCCATGGCAGATCTACTATGCTCGGAC
TAAAGGCGCAGATGCAGTACTGCTTATTGCTGCTGTATTGGCTGACCTAGAAATAACCTTCTTG
CTTAAGATTTGCAAGAAGCTTAGCTTGGCTGCCCTTGTTGAGGTCTCTTTCAATTAGATGACAA
ATTATGCAAGTTGAAATTTAGTATTTTTTTGTTTCACTCTTAATATATTTGACTTTCAATTAGG
TACATGATGAGAGAGAGATGGGTCGTGTACTTGGAATAGAAGGAATCGAGCTTGTTGGCATCAA
TAACCGAAGTCTTG
Conservation Information
Conserved circRNAs NA
PMCS 0.148770476
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015