Detail information of BGIOSGA000550_circ_igg.1


General Information
CircRNA Name BGIOSGA000550_circ_igg.1
ID in PlantcircBase osi_circ_010892
Alias Chr01:36882850_36891820(MH63RS2), Chr01:36870703_36879672(ZS97RS2), Chr01:36882850_36891820(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 39003730-39010605  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2, CIRI2, CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-NN
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACCCGGCCCAGCCCAACCACAGCAGCCCGCCGCCGGCGATCATGAGCAGGATGTTGTTCGGCGA
GAACCGCTCCCTGTCGCTCTTCAGCCTCGGGCCCACtagcgtgggcgtcaacgatgagtgcgct
taggggtgggcaaaattagaccgaaccgaagaaccgaaaccgaaaagaccgagacccaaaaatc
cgggtagc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR5486
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021