Detail information of AT4G17140_circ_g.10


General Information
CircRNA Name AT4G17140_circ_g.10
ID in PlantcircBase ath_circ_031399
Alias Ath_circ_FC2681
Organism Arabidpsis thaliana
Position chr4: 9627470-9629755  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder
Parent gene AT4G17140
Parent gene annotation Pleckstrin homology (PH) domain-containing protein
Parent gene strand -
Alternative splicing AT4G17140_circ_g.6 AT4G17140_circ_g.7 AT4G17140_circ_g.8 AT4G17140_circ_g.9 AT4G17140_circ_g.11 AT4G17140_circ_g.12 AT4G17140_circ_g.13
Support reads 1
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT4G17140.3:8
AT4G17140.2:8
AT4G17140.1:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTTAGAAGCATACCACCATCTTACCTTCCCACCTAAGGCCCTAAACTCGAACAATTTACTCTC
TCTGGCGAGAAGCACCGCCATGAAAGAAGCATCATCctcaatagaaacctcaatgctcggtatc
tgatgtaacaagtctcgcagagatcggttaatggttacagaaacccccttcacatcttgaatta
tgctttca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCAATAGAAACCTCAATGCTCGGTATCTGATGTAACAAGTCTCGCAGAGATCGGTTAATGGTT
ACAGAAACCCCCTTCACATCTTGAATTATGCTTTCACCTATTTCAGCTCCAGAACCAACATTAA
GGTTGATATCCATGACCTAAGTTAATGTTTTTTGGGTCAAAGAACAAAAACATTTAGGAGAGGG
TCATAAGTTAAAAAAAAATGCACAAAAAAGTTGTAAAGATTAAAGCGATATCAACCAGAATAAA
TCATGCTCCTCCTAACAGCCAAATAACGAGAGTCCTCACCATTATTTTCATAGTTTCCACGTGA
ACTGCATTCAGCTCATTTTTGTCTCCAGCAAACCACTGAAAGGTATTGTCCACAGTTATATGCA
CAATATCTAGCTTCAGGTAACTGCAAAAACGAAAAATCCAAAGTGGAGAAAGAAAAATCAACCA
CTCCGATAAGCCTAGTGAATTCAGAGGACCAGTAATTGTTATAACAAAAATGTGTAATGGAGAT
AAAATAGTGGGAAAATTCAAGATCCAAGCATGAACTTACTCAGGGCTATCAGTGTGACGAGGCA
TAACAATTATGGGCTTCTTAAGAGATAGATCCAACTTAAGTGCCGGAGATCCTTCAATTTCGCT
AGTCGTAAACCACTTCTCTGAGTCCGTAATTTGATCCTTCATCTTGACAACCCCTTTTGAATCA
CTTGGCACCAGTCCCATAAAGTATTCAGCAACCTACATGGTGGAGACTGATTGTAGGAAGCAAG
ACAAAAAGTTACTCGTATCTATGCAGAGAGAATGAACTACCTCTTGAATAAAGCGATTCAGATA
AACAATGCGCACTTCAGAAAACTGCCCAGATAGGCAGTAGTCGAAACCTTCATAATCTTCATCA
ATGATACTGAATGATGTGAAAACCAACTAGCAAAGAAAAAAAAAAAAAGGTAAATCAAGATGAA
AAAATTACATGTATCTCATCTACGCAATCCATTCTCATTCCACAAAGAGAAAAGTGAAAAGAAA
CAAACAACCAATACCTCAACAAAAGAAGTTCCTCCAGGGTCTCGCATATCACAGATCCAAAAGT
ACATATGGTTGTCTGGGAGGCTGTCATCACTGATTCGTAAATTTCCAAGACTTGCCTTAATACT
GAACGAGTTCGGAAAGACCTTCAAACAAATGGGAGTACAGAAAATGCCCACTTACCTTCCAAAA
ATTCACTATACTGAAGAAAAAGAGATGAAATACAAAGAGCATAATCACACCTTAATATCTGTCA
GCAGATTGTCTTGTGACAATGTAGCAAACTTAGTTCCATTCTCATTCATTAGGAATATCTGCGC
CCGAGCCATGTTCAATTCCAAGTTGAAAATGATTCTAGATTTCCCCTTCCCTAACAAACCCTTG
ACAGCTGCATCCCTAGAATCTTCAAATCCATCTCTTCTTGGAGAAGTATGCTCTCCAGCTACAG
GAGAGTTGTCCTCAAAAGATTCACAGCTTGGATCCTCAACATTGATAGCATTTACAAACTCCAA
AATAGCAAGAATTGTTGGCCTTCGACAGAAAAATGATAAAGTAGCTAAAGTTACCATCACCTAC
GAAGGCAGCCAAAAGATGAGTGATTTAGTAAGGCTTCACTTTTTAACAATGAAACACTAAGATC
TCCGGATTCGAAGATGCAAAAGCAGAAAACTATCAACCTGGTTATCAATGTTTTTATATTGAGG
TGACGTCTGATGGTATATGACTATTTGAGCCTTCACGAAACTATCCAGTGACTCAGTTGTCTCA
TTGCTTGGCTTAGTGATATTCTTGTTGTCAACAGGGAGCAATCCATCAATGCGACTAAAACTAG
GGGTCCTGAGAGATGTATAGTCAATGGAATCAACCAAGATTTCTGGTGCTTCATAGAACTTTTC
CTCCCCTTCACTAGAAGTAGGATCAAGCCGTTCAGGGCTCCTGCTCTCAGCATCTTCAAAGGAT
GGAAGCATTTCTGAAGACTGAATAAAAGATCTTGCCAAATAACAAGACTCGTTTAAACCAGAAT
GGCTCACCAAATCTTCTATTTCCAGAGATTTCAGTACAGTCCCAATAAACATATCACTCCCTCT
CATCGAAACTTCAACCTGGTTCGTCAAAGGCAAACATACTTTCAGTAAAAAGAATAAGAAATGA
CAAAAAGATAATTTAGAAGCATACCACCATCTTACCTTCCCACCTAAGGCCCTAAACTCGAACA
ATTTACTCTCTCTGGCGAGAAGCACCGCCATGAAAGAAGCATCATC
Conservation Information
Conserved circRNAs NA
PMCS 0.166756831
Functional Information
Coding potential Y
Potential coding position 9629741-9627472(-)
Potential amino acid sequence MAVLLARESKLFEFRALGGKVEVSMRGSDMFIGTVLKSLEIEDLVSHSGLNESCYLARSFIQSS
EMLPSFEDAESRSPERLDPTSSEGEEKFYEAPEILVDSIDYTSLRTPSFSRIDGLLPVDNKNIT
KPSNETTESLDSFVKAQIVIYHQTSPQYKNIDNQVMVTLATLSFFCRRPTILAILEFVNAINVE
DPSCESFEDNSPVAGEHTSPRRDGFEDSRDAAVKGLLGKGKSRIIFNLELNMARAQIFLMNENG
TKFATLSQDNLLTDIKVFPNSFSIKASLGNLRISDDSLPDNHMYFWICDMRDPGGTSFVELVFT
SFSIIDEDYEGFDYCLSGQFSEVRIVYLNRFIQEVAEYFMGLVPSDSKGVVKMKDQITDSEKWF
TTSEIEGSPALKLDLSLKKPIIVMPRHTDSPDYLKLDIVHITVDNTFQWFAGDKNELNAVHVET
MKIMVMDINLNVGSGAEIGESIIQDVKGVSVTINRSLRDLLHQIPSIEVSIEDDASFMAVLLAR
ESKLFEFRALGGKVEVSMRGSDMFIGTVLKSLEIEDLVSHSGLNESCYLARSFIQSSEMLPSFE
DAESRSPERLDPTSSEGEEKFYEAPEILVDSIDYTSLRTPSFSRIDGLLPVDNKNITKPSNETT
ESLDSFVKAQIVIYHQTSPQYKNIDNQVMVTLATLSFFCRRPTILAILEFVNAINVEDPSCESF
EDNSPVAGEHTSPRRDGFEDSRDAAVKGLLGKGKSRIIFNLELNMARAQIFLMNENGTKFATLS
QDNLLTDIKVFPNSFSIKASLGNLRISDDSLPDNHMYFWICDMRDPGGTSFVELVFTSFSIIDE
DYEGFDYCLSGQFSEVRIVYLNRFIQEVAEYFMGLVPSDSKGVVKMKDQITDSEKWFTTSEIEG
SPALKLDLSLKKPIIVMPRHTDSPDYLKLDIVHITVDNTFQWFAGDKNELNAVHVETMKIMVMD
INLNVGSGAEIGESIIQDVKGVSVTINRSLRDLLHQIPSIEVSIEDDASFMAVLLARESKLFEF
RALGGKVEVSMRGSDMFIGTVLKSLEIEDLVSHSGLNESCYLARSFIQSSEMLPSFEDAESRSP
ERLDPTSSEGEEKFYEAPEILVDSIDYTSLRTPSFSRIDGLLPVDNKNITKPSNETTESLDSFV
KAQIVIYHQTSPQYKNIDNQVMVTLATLSFFCRRPTILAILEFVNAINVEDPSCESFEDNSPVA
GEHTSPRRDGFEDSRDAAVKGLLGKGKSRIIFNLELNMARAQIFLMNENGTKFATLSQDNLLTD
IKVFPNSFSIKASLGNLRISDDSLPDNHMYFWICDMRDPGGTSFVELVFTSFSIIDEDYEGFDY
CLSGQFSEVRIVYLNRFIQEVAEYFMGLVPSDSKGVVKMKDQITDSEKWFTTSEIEGSPALKLD
LSLKKPIIVMPRHTDSPDYLKLDIVHITVDNTFQWFAGDKNELNAVHVETMKIMVMDINLNVGS
GAEIGESIIQDVKGVSVTINRSLRDLLHQIPSIEVSIEDDASFMAVLLARESKLFEFRALGGKV
EVSMRGSDMFIGTVLKSLEIEDLVSHSGLNESCYLARSFIQSSEMLPSFEDAESRSPERLDPTS
SEGEEKFYEAPEILVDSIDYTSLRTPSFSRIDGLLPVDNKNITKPSNETTESLDSFVKAQIVIY
HQTSPQYKNIDNQVMVTLATLSFFCRRPTILAILEFVNAINVEDPSCESFEDNSPVAGEHTSPR
RDGFEDSRDAAVKGLLGKGKSRIIFNLELNMARAQIFLMNENGTKFATLSQDNLLTDIKVFPNS
FSIKASLGNLRISDDSLPDNHMYFWICDMRDPGGTSFVELVFTSFSIIDEDYEGFDYCLSGQFS
EVRIVYLNRFIQEVAEYFMGLVPSDSKGVVKMKDQITDSEKWFTTSEIEGSPALKLDLSLKKPI
IVMPRHTDSPDYLKLDIVHITVDNTFQWFAGDKNELNAVHVETMKIMVMDINLNVGSGAEIGES
IIQDVKGVSVTINRSLRDLLHQIPSIEVSIE(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017;Chen et al., 2017a