Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT4G17140_circ_g.10 |
ID in PlantcircBase | ath_circ_031399 |
Alias | Ath_circ_FC2681 |
Organism | Arabidpsis thaliana |
Position | chr4: 9627470-9629755 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, PcircRNA_finder |
Parent gene | AT4G17140 |
Parent gene annotation |
Pleckstrin homology (PH) domain-containing protein |
Parent gene strand | - |
Alternative splicing | AT4G17140_circ_g.6 AT4G17140_circ_g.7 AT4G17140_circ_g.8 AT4G17140_circ_g.9 AT4G17140_circ_g.11 AT4G17140_circ_g.12 AT4G17140_circ_g.13 |
Support reads | 1 |
Tissues | whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT4G17140.3:8 AT4G17140.2:8 AT4G17140.1:8 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.166756831 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
9629741-9627472(-) |
Potential amino acid sequence |
MAVLLARESKLFEFRALGGKVEVSMRGSDMFIGTVLKSLEIEDLVSHSGLNESCYLARSFIQSS EMLPSFEDAESRSPERLDPTSSEGEEKFYEAPEILVDSIDYTSLRTPSFSRIDGLLPVDNKNIT KPSNETTESLDSFVKAQIVIYHQTSPQYKNIDNQVMVTLATLSFFCRRPTILAILEFVNAINVE DPSCESFEDNSPVAGEHTSPRRDGFEDSRDAAVKGLLGKGKSRIIFNLELNMARAQIFLMNENG TKFATLSQDNLLTDIKVFPNSFSIKASLGNLRISDDSLPDNHMYFWICDMRDPGGTSFVELVFT SFSIIDEDYEGFDYCLSGQFSEVRIVYLNRFIQEVAEYFMGLVPSDSKGVVKMKDQITDSEKWF TTSEIEGSPALKLDLSLKKPIIVMPRHTDSPDYLKLDIVHITVDNTFQWFAGDKNELNAVHVET MKIMVMDINLNVGSGAEIGESIIQDVKGVSVTINRSLRDLLHQIPSIEVSIEDDASFMAVLLAR ESKLFEFRALGGKVEVSMRGSDMFIGTVLKSLEIEDLVSHSGLNESCYLARSFIQSSEMLPSFE DAESRSPERLDPTSSEGEEKFYEAPEILVDSIDYTSLRTPSFSRIDGLLPVDNKNITKPSNETT ESLDSFVKAQIVIYHQTSPQYKNIDNQVMVTLATLSFFCRRPTILAILEFVNAINVEDPSCESF EDNSPVAGEHTSPRRDGFEDSRDAAVKGLLGKGKSRIIFNLELNMARAQIFLMNENGTKFATLS QDNLLTDIKVFPNSFSIKASLGNLRISDDSLPDNHMYFWICDMRDPGGTSFVELVFTSFSIIDE DYEGFDYCLSGQFSEVRIVYLNRFIQEVAEYFMGLVPSDSKGVVKMKDQITDSEKWFTTSEIEG SPALKLDLSLKKPIIVMPRHTDSPDYLKLDIVHITVDNTFQWFAGDKNELNAVHVETMKIMVMD INLNVGSGAEIGESIIQDVKGVSVTINRSLRDLLHQIPSIEVSIEDDASFMAVLLARESKLFEF RALGGKVEVSMRGSDMFIGTVLKSLEIEDLVSHSGLNESCYLARSFIQSSEMLPSFEDAESRSP ERLDPTSSEGEEKFYEAPEILVDSIDYTSLRTPSFSRIDGLLPVDNKNITKPSNETTESLDSFV KAQIVIYHQTSPQYKNIDNQVMVTLATLSFFCRRPTILAILEFVNAINVEDPSCESFEDNSPVA GEHTSPRRDGFEDSRDAAVKGLLGKGKSRIIFNLELNMARAQIFLMNENGTKFATLSQDNLLTD IKVFPNSFSIKASLGNLRISDDSLPDNHMYFWICDMRDPGGTSFVELVFTSFSIIDEDYEGFDY CLSGQFSEVRIVYLNRFIQEVAEYFMGLVPSDSKGVVKMKDQITDSEKWFTTSEIEGSPALKLD LSLKKPIIVMPRHTDSPDYLKLDIVHITVDNTFQWFAGDKNELNAVHVETMKIMVMDINLNVGS GAEIGESIIQDVKGVSVTINRSLRDLLHQIPSIEVSIEDDASFMAVLLARESKLFEFRALGGKV EVSMRGSDMFIGTVLKSLEIEDLVSHSGLNESCYLARSFIQSSEMLPSFEDAESRSPERLDPTS SEGEEKFYEAPEILVDSIDYTSLRTPSFSRIDGLLPVDNKNITKPSNETTESLDSFVKAQIVIY HQTSPQYKNIDNQVMVTLATLSFFCRRPTILAILEFVNAINVEDPSCESFEDNSPVAGEHTSPR RDGFEDSRDAAVKGLLGKGKSRIIFNLELNMARAQIFLMNENGTKFATLSQDNLLTDIKVFPNS FSIKASLGNLRISDDSLPDNHMYFWICDMRDPGGTSFVELVFTSFSIIDEDYEGFDYCLSGQFS EVRIVYLNRFIQEVAEYFMGLVPSDSKGVVKMKDQITDSEKWFTTSEIEGSPALKLDLSLKKPI IVMPRHTDSPDYLKLDIVHITVDNTFQWFAGDKNELNAVHVETMKIMVMDINLNVGSGAEIGES IIQDVKGVSVTINRSLRDLLHQIPSIEVSIE(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017;Chen et al., 2017a |