Plant Circular RNA Database

Detail information of Os01g0771350_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os01g0771350_circ_g.1
					
						ID in PlantcircBase
						osa_circ_004084
					
						Alias
						Os_ciR6155
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr1: 32553623-32556067  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRCexplorer, PcircRNA_finder, find_circ
					
						Parent gene
						
							Os01g0771400						
					
						Parent gene annotation
						
							Similar to CM0545.290.nc protein. (Os01t0771400-00)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os01g0771350_circ_g.2 						
					
						Support reads
						2/2
					
						Tissues
						root/seed
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os01t0771350-01:6
Os01t0771400-00:3
Os01t0771350-01:6

General Information
CircRNA Name	Os01g0771350_circ_g.1
ID in PlantcircBase	osa_circ_004084
Alias	Os_ciR6155
Organism	Oryza sativa
Position	chr1: 32553623-32556067 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	CIRCexplorer, PcircRNA_finder, find_circ
Parent gene	Os01g0771400
Parent gene annotation	Similar to CM0545.290.nc protein. (Os01t0771400-00)
Parent gene strand	-
Alternative splicing	Os01g0771350_circ_g.2
Support reads	2/2
Tissues	root/seed
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os01t0771350-01:6 Os01t0771400-00:3 Os01t0771350-01:6

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CTTGAAAGAAAACTAGCAGTTGATTCACCTTGGATTTCATGTCCTCAATCAAATCAGACATAGT
GCTACCTTTTGGCAACCGTATAAAGTGAGATGACACctggaatcggctcaatacgatatctgaa
tcttgaaagtattcaccagccaggcgattgtgagcaatataagcaaatttccactgatcaaagt
agctcacg

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTGGAATCGGCTCAATACGATATCTGAATCTTGAAAGTATTCACCAGCCAGGCGATTGTGAGCA
ATATAAGCAAATTTCCACTGATCAAAGTAGCTCACGTCAGATAGTATCCAATATATGATACAGC
AGAAAAGGTAATTGAAAAGATCACTAAAGGTTTACACTGTAGCACCAGCCTCACCAACAGTAAA
CAAGCAGTAATAAAGTAATACAAAATCGATCGTGTATGAGATGAAAGGTTGAAATAATTACCTT
CGCAAACTGCTCATCAGAAACCAGAAGTTTCTTCTGAATACGCACTTTGATATCTGATAATGTC
TCACCATCACGGATAAGAAAGAAGAAAGGTTCTCCGTAGTAATCAATGTGCTGGAAAGATTGAG
ACAAATGATTCAATAAGAGAAATCCCAGGTCGCCGTTGCTTCTCTCAAATGGCACGCAAGAAAA
CAAACGTCACAAAAAACAAAGAATTGGAGCGAGAATCAGAGATGCACTCTGAAGAAAATACAGA
ACATGCTCAGGCAAATGGAACGATGCTTCATAATAGAACCATAAACCAGCATAGGAATTGAGAG
GCACTGATCATTGAGGTCAGCTTAGTAAGTGACGTTACACCTTTAGGCAGCATTCAGTTGTGTC
CATTGGAGGACTATATAGTGGCCCATTATTACAGATAAAATGCAACGACCTGGTTGTTTACAAT
GAAATGAAATGACACAATAAATGCTTCAGTCATCTCTTGACGAGACAATGCCTAAGAAAGTACC
AAACAGTTTGAGCTTATCCAGGAAGACAGTTAAAACGTGGATAGATATTTCCAACATTGACTGA
GCATGTTCACGCTCAACCCTTCCAAGGCCAAAGCCATATTTCCCATTACACGTTTCCCATGTAA
ACAAGCTAAAGTACAACGACTAGTCAGTCCACCATGTAAAGTAGCAAACCTCAATAATTTCTAC
TATGTTCTTAATCACTGTGACAAGTGGGACAGCTAATACTTTAGAGATGACTGTTTCATCACGC
TTAGATCAAAGAAGGCTGAAATGGGATTTACTCTGAACTATATCCAGAATCATGATGTCGTGAA
CATTGACATGTTCCTCAAAACTGGTCTTAAATATATGACACCATTGACTCTAATTCATTTGATT
ATCCATCTTTTCTAGAAATATCTGTGCAAATAGATAAACATTCGAGGCACACTTAAATTACTTT
GATGACAGATCAAGCGGTACTCTTCACATGACTTAACTAAGTAATTGAATAAATATTGCTGGAC
ATAGTTTGAGGACGAAGTCAATTGTGTTGTATATTAAAAACCAGAGGGAGTACCAAATGACTAC
AAGCAGTATTGAAACATTAGGTTCTAAATATATAAATACCTGTTTTTCTATGATGAAGTGACAG
ACATGAACCAAACGGTCTCGCACACCAGCATTTTTCTCTTCTTCAGGAACCTGACCAACAGAAA
AGGAATATGTGGAGAAAAGGTAGCTAATTATGTACACTAATTAACAACATGTTCAGTTTGAGTG
GGTTATTCCATGGATGATTTATTCCAACATGAGATGACCACATTTTATTGTGTCATCTTATTAC
AGGGGATGACGTGTTGATGAGCCCACTCATTTTAACAAAGCATGCCCAACTGTAGGTCATTTGC
TTTGTAGCCTGAACTTCAGATTGCTTAAAGGACAGAACATCTCAATAAAGTTTCCGTATAAGCA
AATGCTTACCTCTTCAACACATAACAGTCCATTGAATTCATTAACTGAAATTTTCTCCGAAGGT
TGATACACCTGAAAAATTAACGAGGCAAGTGATTGATCATGCATAAAAGAGGTATTTTCAACCA
CTATTAAGTATACGTGTACCTTGATGAAAGAATAGAAAATATTGTTTTCTACGATGAAAGCAGG
GATGAAACTTTACATGGTAAAATGAAATCATGACGTGAGCATTATGTGTTTTTCTTAAAGAGCA
TATGACGTGATTTTTGGTAAAACTTGGAAGAGTCAGGCAAAACCTGCCAGGTTGACTACCTTTC
GTAATCAAAGTGAAAGAAAAAATCTATCAACTCAAACAGAGAGATCTTTGTTATTTTACAGCAG
GAACTGATTTTCTACAACAATACAACCCTCCAGTTTCAGAAACGAGCTTTGCAGTATTTTTTTT
TTGTGTGTAATGGTCTCTACCCTAAGAATAAGCCTTTAAGAATTACAGAAGAACTGTTGAAATA
CCTTGCGTATCTTGTTTTTGTAGACCTCAAATAACCGGAATTCAGCATCACTATAAGATAACTC
AACCTGAAAAAAAATCATTAAATTGCCATGCACACACAACACTTGAAAGAAAACTAGCAGTTGA
TTCACCTTGGATTTCATGTCCTCAATCAAATCAGACATAGTGCTACCTTTTGGCAACCGTATAA
AGTGAGATGACAC
						
					

			
		

Sequences
Splice junction sequence	CTTGAAAGAAAACTAGCAGTTGATTCACCTTGGATTTCATGTCCTCAATCAAATCAGACATAGT GCTACCTTTTGGCAACCGTATAAAGTGAGATGACACctggaatcggctcaatacgatatctgaa tcttgaaagtattcaccagccaggcgattgtgagcaatataagcaaatttccactgatcaaagt agctcacg
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTGGAATCGGCTCAATACGATATCTGAATCTTGAAAGTATTCACCAGCCAGGCGATTGTGAGCA ATATAAGCAAATTTCCACTGATCAAAGTAGCTCACGTCAGATAGTATCCAATATATGATACAGC AGAAAAGGTAATTGAAAAGATCACTAAAGGTTTACACTGTAGCACCAGCCTCACCAACAGTAAA CAAGCAGTAATAAAGTAATACAAAATCGATCGTGTATGAGATGAAAGGTTGAAATAATTACCTT CGCAAACTGCTCATCAGAAACCAGAAGTTTCTTCTGAATACGCACTTTGATATCTGATAATGTC TCACCATCACGGATAAGAAAGAAGAAAGGTTCTCCGTAGTAATCAATGTGCTGGAAAGATTGAG ACAAATGATTCAATAAGAGAAATCCCAGGTCGCCGTTGCTTCTCTCAAATGGCACGCAAGAAAA CAAACGTCACAAAAAACAAAGAATTGGAGCGAGAATCAGAGATGCACTCTGAAGAAAATACAGA ACATGCTCAGGCAAATGGAACGATGCTTCATAATAGAACCATAAACCAGCATAGGAATTGAGAG GCACTGATCATTGAGGTCAGCTTAGTAAGTGACGTTACACCTTTAGGCAGCATTCAGTTGTGTC CATTGGAGGACTATATAGTGGCCCATTATTACAGATAAAATGCAACGACCTGGTTGTTTACAAT GAAATGAAATGACACAATAAATGCTTCAGTCATCTCTTGACGAGACAATGCCTAAGAAAGTACC AAACAGTTTGAGCTTATCCAGGAAGACAGTTAAAACGTGGATAGATATTTCCAACATTGACTGA GCATGTTCACGCTCAACCCTTCCAAGGCCAAAGCCATATTTCCCATTACACGTTTCCCATGTAA ACAAGCTAAAGTACAACGACTAGTCAGTCCACCATGTAAAGTAGCAAACCTCAATAATTTCTAC TATGTTCTTAATCACTGTGACAAGTGGGACAGCTAATACTTTAGAGATGACTGTTTCATCACGC TTAGATCAAAGAAGGCTGAAATGGGATTTACTCTGAACTATATCCAGAATCATGATGTCGTGAA CATTGACATGTTCCTCAAAACTGGTCTTAAATATATGACACCATTGACTCTAATTCATTTGATT ATCCATCTTTTCTAGAAATATCTGTGCAAATAGATAAACATTCGAGGCACACTTAAATTACTTT GATGACAGATCAAGCGGTACTCTTCACATGACTTAACTAAGTAATTGAATAAATATTGCTGGAC ATAGTTTGAGGACGAAGTCAATTGTGTTGTATATTAAAAACCAGAGGGAGTACCAAATGACTAC AAGCAGTATTGAAACATTAGGTTCTAAATATATAAATACCTGTTTTTCTATGATGAAGTGACAG ACATGAACCAAACGGTCTCGCACACCAGCATTTTTCTCTTCTTCAGGAACCTGACCAACAGAAA AGGAATATGTGGAGAAAAGGTAGCTAATTATGTACACTAATTAACAACATGTTCAGTTTGAGTG GGTTATTCCATGGATGATTTATTCCAACATGAGATGACCACATTTTATTGTGTCATCTTATTAC AGGGGATGACGTGTTGATGAGCCCACTCATTTTAACAAAGCATGCCCAACTGTAGGTCATTTGC TTTGTAGCCTGAACTTCAGATTGCTTAAAGGACAGAACATCTCAATAAAGTTTCCGTATAAGCA AATGCTTACCTCTTCAACACATAACAGTCCATTGAATTCATTAACTGAAATTTTCTCCGAAGGT TGATACACCTGAAAAATTAACGAGGCAAGTGATTGATCATGCATAAAAGAGGTATTTTCAACCA CTATTAAGTATACGTGTACCTTGATGAAAGAATAGAAAATATTGTTTTCTACGATGAAAGCAGG GATGAAACTTTACATGGTAAAATGAAATCATGACGTGAGCATTATGTGTTTTTCTTAAAGAGCA TATGACGTGATTTTTGGTAAAACTTGGAAGAGTCAGGCAAAACCTGCCAGGTTGACTACCTTTC GTAATCAAAGTGAAAGAAAAAATCTATCAACTCAAACAGAGAGATCTTTGTTATTTTACAGCAG GAACTGATTTTCTACAACAATACAACCCTCCAGTTTCAGAAACGAGCTTTGCAGTATTTTTTTT TTGTGTGTAATGGTCTCTACCCTAAGAATAAGCCTTTAAGAATTACAGAAGAACTGTTGAAATA CCTTGCGTATCTTGTTTTTGTAGACCTCAAATAACCGGAATTCAGCATCACTATAAGATAACTC AACCTGAAAAAAAATCATTAAATTGCCATGCACACACAACACTTGAAAGAAAACTAGCAGTTGA TTCACCTTGGATTTCATGTCCTCAATCAAATCAGACATAGTGCTACCTTTTGGCAACCGTATAA AGTGAGATGACAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.214024383

Conservation Information
Conserved circRNAs	NA
PMCS	0.214024383

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							32556062-32553925(+)
32556030-32553625(-)
						
						Potential amino acid sequence
						
							MTPGIGSIRYLNLESIHQPGDCEQYKQISTSQTAHQKPEVSSEYAL*(+)
MSDLIEDMKSKVELSYSDAEFRLFEVYKNKIRKVYQPSEKISVNEFNGLLCVEEVPEEEKNAGV
RDRLVHVCHFIIEKQHIDYYGEPFFFLIRDGETLSDIKVRIQKKLLVSDEQFAKWKFAYIAHNR
LAGEYFQDSDIVLSRFQVSSHFIRLPKGSTMSDLIEDMKSKVELSYSDAEFRLFEVYKNKIRKV
YQPSEKISVNEFNGLLCVEEVPEEEKNAGVRDRLVHVCHFIIEKQHIDYYGEPFFFLIRDGETL
SDIKVRIQKKLLVSDEQFAKWKFAYIAHNRLAGEYFQDSDIVLSRFQVSSHFIRLPKGSTMSDL
IEDMKSKVELSYSDAEFRLFEVYKNKIRKVYQPSEKISVNEFNGLLCVEEVPEEEKNAGVRDRL
VHVCHFIIEKQHIDYYGEPFFFLIRDGETLSDIKVRIQKKLLVSDEQFAKWKFAYIAHNRLAGE
YFQDSDIVLSRFQVSSHFIRLPKGSTMSDLIEDMKSKVELSYSDAEFRLFEVYKNKIRKVYQPS
EKISVNEFNGLLCVEEVPEEEKNAGVRDRLVHVCHFIIEKQHIDYYGEPFFFLIRDGETLSDIK
VRIQKKLLVSDEQFAKWKFAYIAHNRLAGEYFQDSDIVLSRFQ(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	32556062-32553925(+) 32556030-32553625(-)
Potential amino acid sequence	MTPGIGSIRYLNLESIHQPGDCEQYKQISTSQTAHQKPEVSSEYAL*(+) MSDLIEDMKSKVELSYSDAEFRLFEVYKNKIRKVYQPSEKISVNEFNGLLCVEEVPEEEKNAGV RDRLVHVCHFIIEKQHIDYYGEPFFFLIRDGETLSDIKVRIQKKLLVSDEQFAKWKFAYIAHNR LAGEYFQDSDIVLSRFQVSSHFIRLPKGSTMSDLIEDMKSKVELSYSDAEFRLFEVYKNKIRKV YQPSEKISVNEFNGLLCVEEVPEEEKNAGVRDRLVHVCHFIIEKQHIDYYGEPFFFLIRDGETL SDIKVRIQKKLLVSDEQFAKWKFAYIAHNRLAGEYFQDSDIVLSRFQVSSHFIRLPKGSTMSDL IEDMKSKVELSYSDAEFRLFEVYKNKIRKVYQPSEKISVNEFNGLLCVEEVPEEEKNAGVRDRL VHVCHFIIEKQHIDYYGEPFFFLIRDGETLSDIKVRIQKKLLVSDEQFAKWKFAYIAHNRLAGE YFQDSDIVLSRFQVSSHFIRLPKGSTMSDLIEDMKSKVELSYSDAEFRLFEVYKNKIRKVYQPS EKISVNEFNGLLCVEEVPEEEKNAGVRDRLVHVCHFIIEKQHIDYYGEPFFFLIRDGETLSDIK VRIQKKLLVSDEQFAKWKFAYIAHNRLAGEYFQDSDIVLSRFQ(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os01g0771350_circ_g.1

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