Plant Circular RNA Database

Detail information of orai.008G201300_circ_g.1

			
						 General Information
					
						CircRNA Name
						orai.008G201300_circ_g.1
					
						ID in PlantcircBase
						gra_circ_000863
					
						Alias
						Chr08:48702616|48704272
					
						Organism
						
							Gossypium raimondii						
					
						Position
						
							chrChr08: 48702616-48704272  JBrowse»						
					
						Reference genome
						
							Graimondii_221						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRI
					
						Parent gene
						
							Gorai.008G201300						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						+
					
						Alternative splicing
						
							NA						
					
						Support reads
						3
					
						Tissues
						ovule
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Gorai.008G201300.7:4
Gorai.008G201300.9:4
Gorai.008G201300.4:4
Gorai.008G201300.3:4
Gorai.008G201300.6:4
Gorai.008G201300.1:4
Gorai.008G201300.8:4
Gorai.008G201300.5:4
Gorai.008G201300.2:4

General Information
CircRNA Name	orai.008G201300_circ_g.1
ID in PlantcircBase	gra_circ_000863
Alias	Chr08:48702616\|48704272
Organism	Gossypium raimondii
Position	chrChr08: 48702616-48704272 JBrowse»
Reference genome	Graimondii_221
Type	e-circRNA
Identification method	CIRI
Parent gene	Gorai.008G201300
Parent gene annotation	NA
Parent gene strand	+
Alternative splicing	NA
Support reads	3
Tissues	ovule
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Gorai.008G201300.7:4 Gorai.008G201300.9:4 Gorai.008G201300.4:4 Gorai.008G201300.3:4 Gorai.008G201300.6:4 Gorai.008G201300.1:4 Gorai.008G201300.8:4 Gorai.008G201300.5:4 Gorai.008G201300.2:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AATTGCAGCCATCTTGAAAAGAAGTAGCCATGTCTTTTCTGATGATAAGGTGTCCGTGAAGATC
GATTGGTTGGAGCAACTCAATCGCAAATACGTTCAGgacacttgaagtgcctagctcccgcatc
gtgattattgaaggaatatatgccttaagtgacaaattgcggcctttactagatcttcgcgtat
ctgtcact

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 679
Transcript exons: 48702616-48702811,48702959-48703072,48703184-48703357,48
704078-48704272
GACACTTGAAGTGCCTAGCTCCCGCATCGTGATTATTGAAGGAATATATGCCTTAAGTGACAAA
TTGCGGCCTTTACTAGATCTTCGCGTATCTGTCACTGGGGGTGTTCACTTTGACCTTGTCAAGA
GAGTGTTACGGGACATTCAACGTGCTGGCCAAGAGCCTGAAGAAATTATCCATCAAATCTCTGA
AACGGTATATCCTATGTACAAGGCTTTTATTGAGCCAGATCTCGAAACAGCACATATTAAAATC
ATCAACAAGTTTAATCCGTTCACTGGATTTCAGAATCCTACTTATATTTTGAAGTCTACAAGGT
TGGTGACACTGGATCAAATTAAGGAAGTTGTATCTGAGGGACACAAAGAAACTATAGAGGAAAC
ATACGACATTTATCTTTTACCCCCTGGTGAAGATCCCGAAGCATGTCAGTCATATCTGAGGATG
AGGAACAGGGATGGCAAATACAATCTCATGTTCGAGGAATGGGTTACTGACAGTCCCTTCATAA
TATCACCAAGAATAACTTTTGAAGTTAGCGTGCGTCTTCTTGGAGGACTAATGGCTTTGGGGTA
TACAATTGCAGCCATCTTGAAAAGAAGTAGCCATGTCTTTTCTGATGATAAGGTGTCCGTGAAG
ATCGATTGGTTGGAGCAACTCAATCGCAAATACGTTCAG
						
					

						Genomic sequence
						
							GACACTTGAAGTGCCTAGCTCCCGCATCGTGATTATTGAAGGAATATATGCCTTAAGTGACAAA
TTGCGGCCTTTACTAGATCTTCGCGTATCTGTCACTGGGGGTGTTCACTTTGACCTTGTCAAGA
GAGTGTTACGGGACATTCAACGTGCTGGCCAAGAGCCTGAAGAAATTATCCATCAAATCTCTGA
AACGGTTTCTTTATCTTACCTATTTTACTTTATAGGTGTCTGATTTAGCTGTTTTGTGAAATCA
TACCTAGTAATAGCCTTAAGTGCTTTATCAAATGCCTCCAAAACAAAGAGTAGTTATAGTAGTT
CTCATGCACTTCTTTTCACACAGGTATATCCTATGTACAAGGCTTTTATTGAGCCAGATCTCGA
AACAGCACATATTAAAATCATCAACAAGTTTAATCCGTTCACTGGATTTCAGAATCCTACTTAT
ATTTTGAAGGTCAAGCTCAAACTCCATTATTTCCATGTCGGAGTAAATGGTTCCATGTTCCTTA
TTGTAGTACTACTTTCTTCCCACAACTTTACAACCAAGGGTTTTCTATCATTGTAGTCTACAAG
GTTGGTGACACTGGATCAAATTAAGGAAGTTGTATCTGAGGGACACAAAGAAACTATAGAGGAA
ACATACGACATTTATCTTTTACCCCCTGGTGAAGATCCCGAAGCATGTCAGTCATATCTGAGGA
TGAGGAACAGGGATGGCAAATACAATCTCATGTTCGAGGTTAGATGTTTCATTTTTAAGCCTTT
TAAAATTCTTAATGAGAATATAGTGGCCTTCTCTGGGTCCATAAAAGTTTTCTTCCTTGTCAGC
AATGAGATGTGCTAATCTCAATCCTTTTTGTACTTCAAACTCCACTGGGGTATAGATGCCAGGT
TTAGTTAGAATCATATTTTCATTGGAATCTCTCTCTTCTCATAGATCTTTACCGAATCTGAAAA
CAGCTGTTTTCATATATAGACATTGTATGTTTATGCCCTTTTTTGTCTAAAAATTAGAATTAAA
CAATACATGGAGGCAAAAATATTAGATGCTGTTTTAAATCACATGCAGTCAAAAACAGAATTAA
ACAGTACATGTAAACAAAGTAATATCTATGTTTCAAGAATTTGTGAGAGCTAGTTTGGATTTGA
TTTCTTTTATAAGTTATGATGACAAAACCAAACATTTACACAAAAATTACTTTAGATTCAATAT
GCTAATCTATTCGAGAATGTATAAGAATGTTCCTTTAAGATTTACTTCTATGTTCTTTCATGAG
TTATTTTGCTCATTTTATACTAAATATGATATCCAAAGTCCTCTCAAATTTAGGTTTTAATGCC
ATATTGGGTGTTTGATTTGTCTTAACTTTTGATATTTAGGATTCTGCTTAATATTCTTTTAGGA
TTAACTTAAATGTGGTAAGTTTTAGAGCTTCTGACCAACTTGCCTGGTTCTCAGGAATGGGTTA
CTGACAGTCCCTTCATAATATCACCAAGAATAACTTTTGAAGTTAGCGTGCGTCTTCTTGGAGG
ACTAATGGCTTTGGGGTATACAATTGCAGCCATCTTGAAAAGAAGTAGCCATGTCTTTTCTGAT
GATAAGGTGTCCGTGAAGATCGATTGGTTGGAGCAACTCAATCGCAAATACGTTCAG
						
					

			
		

Sequences
Splice junction sequence	AATTGCAGCCATCTTGAAAAGAAGTAGCCATGTCTTTTCTGATGATAAGGTGTCCGTGAAGATC GATTGGTTGGAGCAACTCAATCGCAAATACGTTCAGgacacttgaagtgcctagctcccgcatc gtgattattgaaggaatatatgccttaagtgacaaattgcggcctttactagatcttcgcgtat ctgtcact
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 679 Transcript exons: 48702616-48702811,48702959-48703072,48703184-48703357,48 704078-48704272 GACACTTGAAGTGCCTAGCTCCCGCATCGTGATTATTGAAGGAATATATGCCTTAAGTGACAAA TTGCGGCCTTTACTAGATCTTCGCGTATCTGTCACTGGGGGTGTTCACTTTGACCTTGTCAAGA GAGTGTTACGGGACATTCAACGTGCTGGCCAAGAGCCTGAAGAAATTATCCATCAAATCTCTGA AACGGTATATCCTATGTACAAGGCTTTTATTGAGCCAGATCTCGAAACAGCACATATTAAAATC ATCAACAAGTTTAATCCGTTCACTGGATTTCAGAATCCTACTTATATTTTGAAGTCTACAAGGT TGGTGACACTGGATCAAATTAAGGAAGTTGTATCTGAGGGACACAAAGAAACTATAGAGGAAAC ATACGACATTTATCTTTTACCCCCTGGTGAAGATCCCGAAGCATGTCAGTCATATCTGAGGATG AGGAACAGGGATGGCAAATACAATCTCATGTTCGAGGAATGGGTTACTGACAGTCCCTTCATAA TATCACCAAGAATAACTTTTGAAGTTAGCGTGCGTCTTCTTGGAGGACTAATGGCTTTGGGGTA TACAATTGCAGCCATCTTGAAAAGAAGTAGCCATGTCTTTTCTGATGATAAGGTGTCCGTGAAG ATCGATTGGTTGGAGCAACTCAATCGCAAATACGTTCAG
Genomic sequence	GACACTTGAAGTGCCTAGCTCCCGCATCGTGATTATTGAAGGAATATATGCCTTAAGTGACAAA TTGCGGCCTTTACTAGATCTTCGCGTATCTGTCACTGGGGGTGTTCACTTTGACCTTGTCAAGA GAGTGTTACGGGACATTCAACGTGCTGGCCAAGAGCCTGAAGAAATTATCCATCAAATCTCTGA AACGGTTTCTTTATCTTACCTATTTTACTTTATAGGTGTCTGATTTAGCTGTTTTGTGAAATCA TACCTAGTAATAGCCTTAAGTGCTTTATCAAATGCCTCCAAAACAAAGAGTAGTTATAGTAGTT CTCATGCACTTCTTTTCACACAGGTATATCCTATGTACAAGGCTTTTATTGAGCCAGATCTCGA AACAGCACATATTAAAATCATCAACAAGTTTAATCCGTTCACTGGATTTCAGAATCCTACTTAT ATTTTGAAGGTCAAGCTCAAACTCCATTATTTCCATGTCGGAGTAAATGGTTCCATGTTCCTTA TTGTAGTACTACTTTCTTCCCACAACTTTACAACCAAGGGTTTTCTATCATTGTAGTCTACAAG GTTGGTGACACTGGATCAAATTAAGGAAGTTGTATCTGAGGGACACAAAGAAACTATAGAGGAA ACATACGACATTTATCTTTTACCCCCTGGTGAAGATCCCGAAGCATGTCAGTCATATCTGAGGA TGAGGAACAGGGATGGCAAATACAATCTCATGTTCGAGGTTAGATGTTTCATTTTTAAGCCTTT TAAAATTCTTAATGAGAATATAGTGGCCTTCTCTGGGTCCATAAAAGTTTTCTTCCTTGTCAGC AATGAGATGTGCTAATCTCAATCCTTTTTGTACTTCAAACTCCACTGGGGTATAGATGCCAGGT TTAGTTAGAATCATATTTTCATTGGAATCTCTCTCTTCTCATAGATCTTTACCGAATCTGAAAA CAGCTGTTTTCATATATAGACATTGTATGTTTATGCCCTTTTTTGTCTAAAAATTAGAATTAAA CAATACATGGAGGCAAAAATATTAGATGCTGTTTTAAATCACATGCAGTCAAAAACAGAATTAA ACAGTACATGTAAACAAAGTAATATCTATGTTTCAAGAATTTGTGAGAGCTAGTTTGGATTTGA TTTCTTTTATAAGTTATGATGACAAAACCAAACATTTACACAAAAATTACTTTAGATTCAATAT GCTAATCTATTCGAGAATGTATAAGAATGTTCCTTTAAGATTTACTTCTATGTTCTTTCATGAG TTATTTTGCTCATTTTATACTAAATATGATATCCAAAGTCCTCTCAAATTTAGGTTTTAATGCC ATATTGGGTGTTTGATTTGTCTTAACTTTTGATATTTAGGATTCTGCTTAATATTCTTTTAGGA TTAACTTAAATGTGGTAAGTTTTAGAGCTTCTGACCAACTTGCCTGGTTCTCAGGAATGGGTTA CTGACAGTCCCTTCATAATATCACCAAGAATAACTTTTGAAGTTAGCGTGCGTCTTCTTGGAGG ACTAATGGCTTTGGGGTATACAATTGCAGCCATCTTGAAAAGAAGTAGCCATGTCTTTTCTGAT GATAAGGTGTCCGTGAAGATCGATTGGTTGGAGCAACTCAATCGCAAATACGTTCAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							gar_circ_000916 						
					
						PMCS
						0.56217765

Conservation Information
Conserved circRNAs	gar_circ_000916
PMCS	0.56217765

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							48702968-48702621(+)
48702643-48704155(-)
						
						Potential amino acid sequence
						
							MYKAFIEPDLETAHIKIINKFNPFTGFQNPTYILKSTRLVTLDQIKEVVSEGHKETIEETYDIY
LLPPGEDPEACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMALGYTIAA
ILKRSSHVFSDDKVSVKIDWLEQLNRKYVQDT*(+)
MRELGTSSVLNVFAIELLQPIDLHGHLIIRKDMATSFQDGCNCIPQSH*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	48702968-48702621(+) 48702643-48704155(-)
Potential amino acid sequence	MYKAFIEPDLETAHIKIINKFNPFTGFQNPTYILKSTRLVTLDQIKEVVSEGHKETIEETYDIY LLPPGEDPEACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMALGYTIAA ILKRSSHVFSDDKVSVKIDWLEQLNRKYVQDT(+) MRELGTSSVLNVFAIELLQPIDLHGHLIIRKDMATSFQDGCNCIPQSH(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Zhao et al., 2017b

circRNA

Detail information of orai.008G201300_circ_g.1

Address

Any questions?

Supported by