Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d008379_circ_g.2 |
ID in PlantcircBase | zma_circ_009537 |
Alias | Zm08circ00003, GRMZM2G082185_C1 |
Organism | Zea mays |
Position | chr8: 6804340-6804596 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d008379 |
Parent gene annotation |
cysteine synthase1 |
Parent gene strand | + |
Alternative splicing | Zm00001d008379_circ_g.1 |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d008379_T003:2 Zm00001d008379_T002:2 Zm00001d008379_T005:1 Zm00001d008379_T004:2 Zm00001d008379_T001:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.300634883 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
6804359-6804593(+) 6804346-6804342(-) |
Potential amino acid sequence |
MVYLNNVVKGSVANVAAKLEIMEPCCSVKDRIGYSMINDAEQKGLITPGKLIGNTPMVYLNNVV KGSVANVAAKLEIMEPCCSVKDRIGYSMINDAEQKGLITPGKLIGNTPMVYLNNVVKGSVANVA AKLEIMEPCCSVKDRIGYSMINDAEQKGLITPGKLIGNTPMVYLNNVVKGSVANVAAKLEIMEP CCSVKDRIGYSMINDAEQKGLITPGK(+) MSFPGVIKPFCSASFIILYPILSLTLQQGSIISSLAATLATEPLTTLLRYTIGVLPMSFPGVIK PFCSASFIILYPILSLTLQQGSIISSLAATLATEPLTTLLRYTIGVLPMSFPGVIKPFCSASFI ILYPILSLTLQQGSIISSLAATLATEPLTTLLRYTIGVLPM(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Han et al., 2020;Zhang et al., 2019 |