Detail information of Os01g0689451_circ_g.4


General Information
CircRNA Name Os01g0689451_circ_g.4
ID in PlantcircBase osa_circ_003413
Alias Os_ciR5095
Organism Oryza sativa
Position chr1: 28455839-28456194  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder, find_circ
Parent gene Os01g0689451
Parent gene annotation Similar to predicted protein. (Os01t0689451-01);Similar to predi
cted protein. (Os01t0689451-02)
Parent gene strand -
Alternative splicing Os01g0689451_circ_g.3
Support reads 3/28
Tissues root/root, seed
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os01t0689451-01:1
Os01t0689451-02:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGGAGGCATCCTTGCAATCACAGGTTGCTTCTGAATTAGACTTGGTGGAATTCTCTGTTACTTT
TCTCGTTGTTTTCCCTTCGATCCACGCGAAGACAACctgtggaagatgcacacatctgcaataa
actgcagccttgcattgaaagatgatatatcagagaaatttccagattgctgcatccttcttgt
ctcctctg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 356
Transcript exons: 28455839-28456194
CTGTGGAAGATGCACACATCTGCAATAAACTGCAGCCTTGCATTGAAAGATGATATATCAGAGA
AATTTCCAGATTGCTGCATCCTTCTTGTCTCCTCTGCTATATCAATTAACTCTTTACGGATAGC
ATTGTGCCAATACAGAATCTCATCTATGGGATGCCTTTCAACCTGACCATCAATAGATTCTGCA
TACTTTTTGTTCCCAGCTTTAGAATCTTCATGTGAAGAAATATGGTTATCTGCATGATCAATGG
AGGAGGCATCCTTGCAATCACAGGTTGCTTCTGAATTAGACTTGGTGGAATTCTCTGTTACTTT
TCTCGTTGTTTTCCCTTCGATCCACGCGAAGACAAC

Genomic sequence CTGTGGAAGATGCACACATCTGCAATAAACTGCAGCCTTGCATTGAAAGATGATATATCAGAGA
AATTTCCAGATTGCTGCATCCTTCTTGTCTCCTCTGCTATATCAATTAACTCTTTACGGATAGC
ATTGTGCCAATACAGAATCTCATCTATGGGATGCCTTTCAACCTGACCATCAATAGATTCTGCA
TACTTTTTGTTCCCAGCTTTAGAATCTTCATGTGAAGAAATATGGTTATCTGCATGATCAATGG
AGGAGGCATCCTTGCAATCACAGGTTGCTTCTGAATTAGACTTGGTGGAATTCTCTGTTACTTT
TCTCGTTGTTTTCCCTTCGATCCACGCGAAGACAAC
Conservation Information
Conserved circRNAs osi_circ_002309*
PMCS 0.459301511
Functional Information
Coding potential Y
Potential coding position 28456092-28455863(+)
28455923-28456154(-)
28455883-28456132(-)
Potential amino acid sequence MEEASLQSQVASELDLVEFSVTFLVVFPSIHAKTTCGRCTHLQ*(+)
MQQSGNFSDISSFNARLQFIADVCIFHRLSSRGSKGKQREK*(-)
MQGCSLLQMCASSTGCLRVDRRENNEKSNREFHQV*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017