Detail information of AT3G59780_circ_g.1


General Information
CircRNA Name AT3G59780_circ_g.1
ID in PlantcircBase ath_circ_028341
Alias NA
Organism Arabidpsis thaliana
Position chr3: 22087114-22089408  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene AT3G59780
Parent gene annotation Rhodanese/Cell cycle control phosphatase superfamily protein
Parent gene strand +
Alternative splicing AT3G59780_circ_g.2 AT3G59780_circ_g.3 AT3G59780_circ_g.4 AT3G59780_circ_g.5 AT3G59780_circ_g.6 AT3G59780_circ_g.7 AT3G59780_circ_g.8 AT3G59780_circ_g.9 AT3G59780_circ_g.10
Support reads 1
Tissues aerial
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT3G59780.1:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAGGCCATACTTGATGCAAGGTGGGTATAGATCATGGGTACAGGAAGGTCTTCGTGTGAAAGAG
CCAAAACCTGAGACAACACTTACCATCCTCAACGAGattttatttcctggcaattggcgaggct
gttcttccttcaggagagagttgattcacagatacagttcaggtgacaatgccttctttggtat
ctctaatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATTTTATTTCCTGGCAATTGGCGAGGCTGTTCTTCCTTCAGGAGAGAGTTGATTCACAGATACA
GTTCAGGTGACAATGCCTTCTTTGGTATCTCTAATGGAACACGCCTGCAGAAGAGTTTCGTACC
TCAAGCCACTGGGAGTTTCTTGACCGGTACTATCGAAAAAACAGAACAACCAGTATCAACATTC
GGAAGTTTGTGCCAGAATGAGTTGGACAGAATAAACTACATGGTTTATAACATGAGTGAAGCTT
TTGTAGCGAGTGATGAGGGACTGACATATGTAGAAAATGGAGAAGATGTGTTCCCTGTTGAAGC
TGTTGCAGCAGATGTTTCTCCTGTTGAAGCTGTTGTACCAGATGTTTCCCCCATTGAATGCCTT
TCTGCTGAGACTTTAACCGATAAGACCAGTAGCCTTATAGACTCTGTTGAATCGGGAACCAATG
CGACTGTTAAAATATCTCCGGATAGTTCAGTCTCACTTCCTGATGCGAAAGCTAGCTTTGATGA
CTTTTCTTCTGGGCTCAAGCAGTCCTTCAGCTCTTCACTTCCTGATGCGAAAGCTAGCGTTGAT
GACTTTTCTTCTGGGGTCAAGGAGTCCTTCAGCTCTTCACTTAACCAAGGAGAAAATGCTGTAA
AGAACACTTTGGAGTCCTTCTCCTCGTCTGTGACATCCATTACAAAGAATGCTTCTGAAGTTGT
AGATAGTGCAGTTAACAGAGCGTTTTCTACGCTAGACCAAACGGGAGATGTAGCTGGAGACAAG
TTTTCGAGTTTTTCTACTGGCTTGAAGGAAGCTTCAAACAGAGCAGCTGTTATTGCCATTGATC
TGCTGAGGCAATCAGTTAGTCTTGGAGAGAGATCTGTAACAAATGGAGTTTCTTTTGTTGTGTA
CTCTTATGGATCAGCAAAAGAATTACTTCCTCCAGATGTAAAGAGTGCCCTTAACTCGTCAGAA
GATGTTGCTCTAAAAGTATTGAGTCCCGTGGGAGCTGTATTGCAGCAGGTGCTTTGTCTTATAT
ACTGAAGGTTCATTCATATTTTCGTAGAAGAAAATTAATTCTTTATGGACTACAGTTGCTAACA
GTATCATGATGAACAGGTATCTGTTGCCATTGGAGGTTTGGAGAGAAATATCGGTTTGGATCCA
GATGACCCAATCCTTCACCTTTTTCTCTTCGTAGGCACCACAGGAACCTTTTGGTACACGGCTT
TTCTTACCCTAGAAGGATATTAAACTTGCTTTTCTTGAGAGGACAATGTAGTATAGAAGAATTT
ATATTTTCCACCAGATATTTGCAGGGTTCTATATCGGGTTTGGACATATGGTGGATATGCTGGA
GATTTGTCTCCCAAGTCAACTCTGGACCTTTTAAAATCAAGAGACAAGTCAGTGCTCATAGATG
TCAGGCCTGAAGTAAGACGCTCTTAAGTTTCTAACAAGTTCCCATTTCATGATATATAACTTTT
CAAAACCCACCACAATTTGATTATTTCTTTCACATAATGTTCATCAAGGAGTTTGGGTTGAAAT
AAAAATGCTCATTTTGGCTACTGTCTTTTTGAAGGCCTTGAGAGAGAAAGATGGAATACCTGAT
CTGCGGAGATCAGCTCGATTTCGATATTCTAGCGTGACACTGCCTGAGGTTGGTTTTAGCATCC
TCATTGTTGTTGACCACAGCGAATATAGAAACTCTACACATGTAATCTATGAACACAACGAGGT
TTCAGCAATCAGTGCAACAGAAGTAGGATATCAGACTTTTCTTTATTCACATTTTTTATGGGTT
CTTGTTCTTGATTCATGTTTAAGGTTGACGGTGATGTCAAACGGCTACTGAAAGGTGGAAGTGA
AGTAGATGATATCTTGACAGCAGTAATCATCAAGAACTTGAAAATAGTTCAGGTGTGCTACCTT
CATGCTTCTTTTGTAACTTACTATGGTTTTGTGGCTCGAGCTGTTTCAGTTTCTAAGTATGCTG
ACATCTCATAATTTTGCTTACTCTCCCACTAATAGGACAGGTCCAAGGTTGTTGTTATGGATGC
TGATGGAACTCGTTCAAAGGGTATTGCAAGAGCCCTGAGAAAAGTTGGGATTAAGGCAAGTCAT
TCAGGCATAATTCACTTTGAACACAATAAGTTACCTTTAAACATTTTCGAATAAGCTCTTCTTT
GGTTGCCTATGATGTGACAGAGGCCATACTTGATGCAAGGTGGGTATAGATCATGGGTACAGGA
AGGTCTTCGTGTGAAAGAGCCAAAACCTGAGACAACACTTACCATCCTCAACGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.136270097
Functional Information
Coding potential Y
Potential coding position 22087345-22089405(+)
Potential amino acid sequence MVYNMSEAFVASDEGLTYVENGEDVFPVEAVAADVSPVEAVVPDVSPIECLSAETLTDKTSSLI
DSVESGTNATVKISPDSSVSLPDAKASFDDFSSGLKQSFSSSLPDAKASVDDFSSGVKESFSSS
LNQGENAVKNTLESFSSSVTSITKNASEVVDSAVNRAFSTLDQTGDVAGDKFSSFSTGLKEASN
RAAVIAIDLLRQSVSLGERSVTNGVSFVVYSYGSAKELLPPDVKSALNSSEDVALKVLSPVGAV
LQQVSVAIGGLERNIGLDPDDPILHLFLFVGTTGTFWVLYRVWTYGGYAGDLSPKSTLDLLKSR
DKSVLIDVRPEALREKDGIPDLRRSARFRYSSVTLPEVDGDVKRLLKGGSEVDDILTAVIIKNL
KIVQDRSKVVVMDADGTRSKGIARALRKVGIKRPYLMQGGYRSWVQEGLRVKEPKPETTLTILN
EILFPGNWRGCSSFRRELIHRYSSGDNAFFGISNGTRLQKSFVPQATGSFLTGTIEKTEQPVST
FGSLCQNELDRINYMVYNMSEAFVASDEGLTYVENGEDVFPVEAVAADVSPVEAVVPDVSPIEC
LSAETLTDKTSSLIDSVESGTNATVKISPDSSVSLPDAKASFDDFSSGLKQSFSSSLPDAKASV
DDFSSGVKESFSSSLNQGENAVKNTLESFSSSVTSITKNASEVVDSAVNRAFSTLDQTGDVAGD
KFSSFSTGLKEASNRAAVIAIDLLRQSVSLGERSVTNGVSFVVYSYGSAKELLPPDVKSALNSS
EDVALKVLSPVGAVLQQVSVAIGGLERNIGLDPDDPILHLFLFVGTTGTFWVLYRVWTYGGYAG
DLSPKSTLDLLKSRDKSVLIDVRPEALREKDGIPDLRRSARFRYSSVTLPEVDGDVKRLLKGGS
EVDDILTAVIIKNLKIVQDRSKVVVMDADGTRSKGIARALRKVGIKRPYLMQGGYRSWVQEGLR
VKEPKPETTLTILNEILFPGNWRGCSSFRRELIHRYSSGDNAFFGISNGTRLQKSFVPQATGSF
LTGTIEKTEQPVSTFGSLCQNELDRINYMVYNMSEAFVASDEGLTYVENGEDVFPVEAVAADVS
PVEAVVPDVSPIECLSAETLTDKTSSLIDSVESGTNATVKISPDSSVSLPDAKASFDDFSSGLK
QSFSSSLPDAKASVDDFSSGVKESFSSSLNQGENAVKNTLESFSSSVTSITKNASEVVDSAVNR
AFSTLDQTGDVAGDKFSSFSTGLKEASNRAAVIAIDLLRQSVSLGERSVTNGVSFVVYSYGSAK
ELLPPDVKSALNSSEDVALKVLSPVGAVLQQVSVAIGGLERNIGLDPDDPILHLFLFVGTTGTF
WVLYRVWTYGGYAGDLSPKSTLDLLKSRDKSVLIDVRPEALREKDGIPDLRRSARFRYSSVTLP
EVDGDVKRLLKGGSEVDDILTAVIIKNLKIVQDRSKVVVMDADGTRSKGIARALRKVGIKRPYL
MQGGYRSWVQEGLRVKEPKPETTLTILNEILFPGNWRGCSSFRRELIHRYSSGDNAFFGISNGT
RLQKSFVPQATGSFLTGTIEKTEQPVSTFGSLCQNELDRINYMVYNMSEAFVASDEGLTYVENG
EDVFPVEAVAADVSPVEAVVPDVSPIECLSAETLTDKTSSLIDSVESGTNATVKISPDSSVSLP
DAKASFDDFSSGLKQSFSSSLPDAKASVDDFSSGVKESFSSSLNQGENAVKNTLESFSSSVTSI
TKNASEVVDSAVNRAFSTLDQTGDVAGDKFSSFSTGLKEASNRAAVIAIDLLRQSVSLGERSVT
NGVSFVVYSYGSAKELLPPDVKSALNSSEDVALKVLSPVGAVLQQVSVAIGGLERNIGLDPDDP
ILHLFLFVGTTGTFWVLYRVWTYGGYAGDLSPKSTLDLLKSRDKSVLIDVRPEALREKDGIPDL
RRSARFRYSSVTLPEVDGDVKRLLKGGSEVDDILTAVIIKNLKIVQDRSKVVVMDADGTRSKGI
ARALRKVGIKRPYLMQGGYRSWVQEGLRVKEPKPETTLTILNE(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017