Detail information of Zm00001d045603_circ_g.1


General Information
CircRNA Name Zm00001d045603_circ_g.1
ID in PlantcircBase zma_circ_009906
Alias zma_circ_0003193
Organism Zea mays
Position chr9: 28450021-28452252  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ
Parent gene Zm00001d045603
Parent gene annotation polymerase II transcription-mediator3
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Zm00001d045603_T023:3
Zm00001d045603_T029:3
Zm00001d045603_T003:4
Zm00001d045603_T062:2
Zm00001d045603_T027:2
Zm00001d045603_T058:3
Zm00001d045603_T041:3
Zm00001d045603_T016:2
Zm00001d045603_T012:3
Zm00001d045603_T020:3
Zm00001d045603_T018:3
Zm00001d045603_T007:2
Zm00001d045603_T021:2
Zm00001d045603_T053:3
Zm00001d045603_T024:3
Zm00001d045603_T061:3
Zm00001d045603_T068:2
Zm00001d045603_T015:3
Zm00001d045603_T011:2
Zm00001d045603_T036:3
Zm00001d045603_T010:3
Zm00001d045603_T033:3
Zm00001d045603_T051:3
Zm00001d045603_T056:3
Zm00001d045603_T054:3
Zm00001d045603_T001:3
Zm00001d045603_T059:2
Zm00001d045603_T005:3
Zm00001d045603_T035:4
Zm00001d045603_T034:3
Zm00001d045603_T064:2
Zm00001d045603_T047:3
Zm00001d045603_T028:2
Zm00001d045603_T043:3
Zm00001d045603_T066:2
Zm00001d045603_T009:2
Zm00001d045603_T026:3
Zm00001d045603_T049:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGATCCTTCTATGGTTCATGCTGGCTGTGGTGGCCTATTAGGAACATGCCATTCAAAGGATTGC
GCTGGTGTTGATTTAGTCGATCCACTTTCTGCAGAGgtatccaagcggcctcgttctgaattaa
cagaagtctcttctcatactggcaaagatgtttgtgaaaacatacaagacccgaatggtcaggt
tggacact
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTATCCAAGCGGCCTCGTTCTGAATTAACAGAAGTCTCTTCTCATACTGGCAAAGATGTTTGTG
AAAACATACAAGACCCGAATGGTCAGGTTGGACACTCTTGGGGCTGGGACGATGAGGGTGTCGT
TATGGACATCAATATACTTCTGTCAGAGTTTGGAGATTTTAGTGACTTCTTTCAACAAGAGGAG
TTAGATTTTGGTGAGGTAGGTATTCTATATACTTGTAGTATTTTATTTACCTTCGGAGCCATTA
CTATAACATTCAAACAGTGACTCAATCAAGTCTGAGGCACTCTTTGATAGTGCTGAGCTCAACT
TAAATGGCTATGAGCCTATGATAGAAATATGACATTTAAAATCCAGTACATTTTAATTCTGACA
TGTATATGTCATCAGCCGCAATCTGCTAACTGGAATAAACTATATTGACTCTTTGAGTTGCATT
TAATATTGCTGCATTGCTACACTAATGTTACAAGAGAAATTTACTACTGGTTCCTTGTCTCTAT
TTTAACCAACTACGTCACTACTGTTTTTTATAGTGTTTAAGTTATAACCAATGACCTCTGTTAG
AGCTCATAATTTAAACTCATTGATTGAAAAACATTTAATTGTGGTGTCACTAAAGGTGAAAGAA
ATTTCTTATAGCGTGCATTCTCATCCCCTATTTAACTTTTACTTTAACTAGTTGTGAAATGACT
ATTGAATTATCTGCTCCTTGGATTTATTTGAAGATTTACCATGCTACTTTTGATGATGGGGAAA
CTGTCATCATATAAGTTTTATTTAAGGAGTTAGCATGCTACCTTTGATGATGGGGAAATACATC
CCTCTATGATTACATGGCTGTTTAGAGTGGCATCTTTGTGATTTACCTGTAGTATTAATTCATG
TAACTGAAAATTCCATTTCATATAGCCTCCAGGTACTGCTGAATCACATGCTCTAGTAATTCCT
GCTTCAGACTGTGGAGATGTCACATTCACAGATAGTCCATCAACAGCAATGGATATCCCTGAAC
AAAGACTTTCTCCTGTTGGTTTCACAACTTTGGATGCATTTGACCATCAAATTATGGCCCCAGC
TCAAGATGTTGTTGCTAAAGTTCAAGAACCTCATAATGATACTGCAACACCTGCACAGTCCCAC
TCGCAAGTTTTATCATCTGGAAGATTTGATTATCTTACCAAAGCTGAAGCAAAGCTCACATTTG
CTCCAGAATATGCAGCTGTTGAAATTTTGATTGCTGAGGCCCCAACACCATTGTTTACAAATCC
ATACTTTCCTAGATCAAAGAAACCAGGCAGTTCTAGTTTTAGTGCAAGAGTTTATTCATATGAT
GTTGCACAAAGCTCTCAAATTGAATCCACAGGAGACAAGCCAGATAAGACTTCTAAACTAATAT
CTGGTAATCATTTACATGATATTAGTTCATCAAACTTGTACACACTTGTCCAAGGTGGGAATAA
AGGGAGTGATAAGATCTTAAAGAGTACTGATACACAGCCCTCTAAGGGAGAATTGTCACCACCT
ATTTCTGGTGTGACTTCATTTAATTTTTCTCTTGTTTCACAAAAGAAGAGTGGCAACATGTTCA
ATGCTGGCTATTTTCTGCTGTCTATGAAGACTGCTTTGGCAACTGAAATTGAATGCATCACGTT
CCAGGCTGCCATGTGCAGAATTAGGCATACACTATTGTCTCTGAGAAGCAAAGCATCTGCCGAG
TTTAACAGTGCAACATCCAGCTTCATACAGACAAATGTCAGCAACAAATCAGATCTCACCCCCA
GGTATGACATGAGAAAAAAAGAAATTATGACTGTAAGGTTATCTAGTGATATTGATCATGAAAT
GTTTGACAGATCCTTAATGGACAATGTGGGAGTTTGGAGGCCTGTTGTTACACCTAAAGGGCCT
AAATCTCTTGAGTCTTTGTCTGCTAACACATTAACTGGTGCAAGCCCAAGTCTGTCTATACAAA
GACAACCTGTTGTAGATCTTCTCTGTGCCATGACTCTGCTTGTTCAACAATCTACTTCGTTTGT
TGATATGTCACTTGATATGGATGACGGGGACGGTTCTTTTTTCTGGCTTTCCCTGGATGAGCAA
AAGAGACGTGGATTTTCTTGTGATCCTTCTATGGTTCATGCTGGCTGTGGTGGCCTATTAGGAA
CATGCCATTCAAAGGATTGCGCTGGTGTTGATTTAGTCGATCCACTTTCTGCAGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.209990136
Functional Information
Coding potential Y
Potential coding position 28450151-28452249(+)
Potential amino acid sequence MDINILLSEFGDFSDFFQQEELDFGEPPGTAESHALVIPASDCGDVTFTDSPSTAMDIPEQRLS
PVGFTTLDAFDHQIMAPAQDVVAKVQEPHNDTATPAQSHSQVLSSGRFDYLTKAEAKLTFAPEY
AAVEILIAEAPTPLFTNPYFPRSKKPGSSSFSARVYSYDVAQSSQIESTGDKPDKTSKLISGNH
LHDISSSNLYTLVQGGNKGSDKILKSTDTQPSKGELSPPISGVTSFNFSLVSQKKSGNMFNAGY
FLLSMKTALATEIECITFQAAMCRIRHTLLSLRSKASAEFNSATSSFIQTNVSNKSDLTPRSLM
DNVGVWRPVVTPKGPKSLESLSANTLTGASPSLSIQRQPVVDLLCAMTLLVQQSTSFVDMSLDM
DDGDGSFFWLSLDEQKRRGFSCDPSMVHAGCGGLLGTCHSKDCAGVDLVDPLSAEVSKRPRSEL
TEVSSHTGKDVCENIQDPNGQVGHSWGWDDEGVVMDINILLSEFGDFSDFFQQEELDFGEPPGT
AESHALVIPASDCGDVTFTDSPSTAMDIPEQRLSPVGFTTLDAFDHQIMAPAQDVVAKVQEPHN
DTATPAQSHSQVLSSGRFDYLTKAEAKLTFAPEYAAVEILIAEAPTPLFTNPYFPRSKKPGSSS
FSARVYSYDVAQSSQIESTGDKPDKTSKLISGNHLHDISSSNLYTLVQGGNKGSDKILKSTDTQ
PSKGELSPPISGVTSFNFSLVSQKKSGNMFNAGYFLLSMKTALATEIECITFQAAMCRIRHTLL
SLRSKASAEFNSATSSFIQTNVSNKSDLTPRSLMDNVGVWRPVVTPKGPKSLESLSANTLTGAS
PSLSIQRQPVVDLLCAMTLLVQQSTSFVDMSLDMDDGDGSFFWLSLDEQKRRGFSCDPSMVHAG
CGGLLGTCHSKDCAGVDLVDPLSAEVSKRPRSELTEVSSHTGKDVCENIQDPNGQVGHSWGWDD
EGVVMDINILLSEFGDFSDFFQQEELDFGEPPGTAESHALVIPASDCGDVTFTDSPSTAMDIPE
QRLSPVGFTTLDAFDHQIMAPAQDVVAKVQEPHNDTATPAQSHSQVLSSGRFDYLTKAEAKLTF
APEYAAVEILIAEAPTPLFTNPYFPRSKKPGSSSFSARVYSYDVAQSSQIESTGDKPDKTSKLI
SGNHLHDISSSNLYTLVQGGNKGSDKILKSTDTQPSKGELSPPISGVTSFNFSLVSQKKSGNMF
NAGYFLLSMKTALATEIECITFQAAMCRIRHTLLSLRSKASAEFNSATSSFIQTNVSNKSDLTP
RSLMDNVGVWRPVVTPKGPKSLESLSANTLTGASPSLSIQRQPVVDLLCAMTLLVQQSTSFVDM
SLDMDDGDGSFFWLSLDEQKRRGFSCDPSMVHAGCGGLLGTCHSKDCAGVDLVDPLSAEVSKRP
RSELTEVSSHTGKDVCENIQDPNGQVGHSWGWDDEGVVMDINILLSEFGDFSDFFQQEELDFGE
PPGTAESHALVIPASDCGDVTFTDSPSTAMDIPEQRLSPVGFTTLDAFDHQIMAPAQDVVAKVQ
EPHNDTATPAQSHSQVLSSGRFDYLTKAEAKLTFAPEYAAVEILIAEAPTPLFTNPYFPRSKKP
GSSSFSARVYSYDVAQSSQIESTGDKPDKTSKLISGNHLHDISSSNLYTLVQGGNKGSDKILKS
TDTQPSKGELSPPISGVTSFNFSLVSQKKSGNMFNAGYFLLSMKTALATEIECITFQAAMCRIR
HTLLSLRSKASAEFNSATSSFIQTNVSNKSDLTPRSLMDNVGVWRPVVTPKGPKSLESLSANTL
TGASPSLSIQRQPVVDLLCAMTLLVQQSTSFVDMSLDMDDGDGSFFWLSLDEQKRRGFSCDPSM
VHAGCGGLLGTCHSKDCAGVDLVDPLSAE(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b