Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d045603_circ_g.1 |
ID in PlantcircBase | zma_circ_009906 |
Alias | zma_circ_0003193 |
Organism | Zea mays |
Position | chr9: 28450021-28452252 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d045603 |
Parent gene annotation |
polymerase II transcription-mediator3 |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d045603_T023:3 Zm00001d045603_T029:3 Zm00001d045603_T003:4 Zm00001d045603_T062:2 Zm00001d045603_T027:2 Zm00001d045603_T058:3 Zm00001d045603_T041:3 Zm00001d045603_T016:2 Zm00001d045603_T012:3 Zm00001d045603_T020:3 Zm00001d045603_T018:3 Zm00001d045603_T007:2 Zm00001d045603_T021:2 Zm00001d045603_T053:3 Zm00001d045603_T024:3 Zm00001d045603_T061:3 Zm00001d045603_T068:2 Zm00001d045603_T015:3 Zm00001d045603_T011:2 Zm00001d045603_T036:3 Zm00001d045603_T010:3 Zm00001d045603_T033:3 Zm00001d045603_T051:3 Zm00001d045603_T056:3 Zm00001d045603_T054:3 Zm00001d045603_T001:3 Zm00001d045603_T059:2 Zm00001d045603_T005:3 Zm00001d045603_T035:4 Zm00001d045603_T034:3 Zm00001d045603_T064:2 Zm00001d045603_T047:3 Zm00001d045603_T028:2 Zm00001d045603_T043:3 Zm00001d045603_T066:2 Zm00001d045603_T009:2 Zm00001d045603_T026:3 Zm00001d045603_T049:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.209990136 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
28450151-28452249(+) |
Potential amino acid sequence |
MDINILLSEFGDFSDFFQQEELDFGEPPGTAESHALVIPASDCGDVTFTDSPSTAMDIPEQRLS PVGFTTLDAFDHQIMAPAQDVVAKVQEPHNDTATPAQSHSQVLSSGRFDYLTKAEAKLTFAPEY AAVEILIAEAPTPLFTNPYFPRSKKPGSSSFSARVYSYDVAQSSQIESTGDKPDKTSKLISGNH LHDISSSNLYTLVQGGNKGSDKILKSTDTQPSKGELSPPISGVTSFNFSLVSQKKSGNMFNAGY FLLSMKTALATEIECITFQAAMCRIRHTLLSLRSKASAEFNSATSSFIQTNVSNKSDLTPRSLM DNVGVWRPVVTPKGPKSLESLSANTLTGASPSLSIQRQPVVDLLCAMTLLVQQSTSFVDMSLDM DDGDGSFFWLSLDEQKRRGFSCDPSMVHAGCGGLLGTCHSKDCAGVDLVDPLSAEVSKRPRSEL TEVSSHTGKDVCENIQDPNGQVGHSWGWDDEGVVMDINILLSEFGDFSDFFQQEELDFGEPPGT AESHALVIPASDCGDVTFTDSPSTAMDIPEQRLSPVGFTTLDAFDHQIMAPAQDVVAKVQEPHN DTATPAQSHSQVLSSGRFDYLTKAEAKLTFAPEYAAVEILIAEAPTPLFTNPYFPRSKKPGSSS FSARVYSYDVAQSSQIESTGDKPDKTSKLISGNHLHDISSSNLYTLVQGGNKGSDKILKSTDTQ PSKGELSPPISGVTSFNFSLVSQKKSGNMFNAGYFLLSMKTALATEIECITFQAAMCRIRHTLL SLRSKASAEFNSATSSFIQTNVSNKSDLTPRSLMDNVGVWRPVVTPKGPKSLESLSANTLTGAS PSLSIQRQPVVDLLCAMTLLVQQSTSFVDMSLDMDDGDGSFFWLSLDEQKRRGFSCDPSMVHAG CGGLLGTCHSKDCAGVDLVDPLSAEVSKRPRSELTEVSSHTGKDVCENIQDPNGQVGHSWGWDD EGVVMDINILLSEFGDFSDFFQQEELDFGEPPGTAESHALVIPASDCGDVTFTDSPSTAMDIPE QRLSPVGFTTLDAFDHQIMAPAQDVVAKVQEPHNDTATPAQSHSQVLSSGRFDYLTKAEAKLTF APEYAAVEILIAEAPTPLFTNPYFPRSKKPGSSSFSARVYSYDVAQSSQIESTGDKPDKTSKLI SGNHLHDISSSNLYTLVQGGNKGSDKILKSTDTQPSKGELSPPISGVTSFNFSLVSQKKSGNMF NAGYFLLSMKTALATEIECITFQAAMCRIRHTLLSLRSKASAEFNSATSSFIQTNVSNKSDLTP RSLMDNVGVWRPVVTPKGPKSLESLSANTLTGASPSLSIQRQPVVDLLCAMTLLVQQSTSFVDM SLDMDDGDGSFFWLSLDEQKRRGFSCDPSMVHAGCGGLLGTCHSKDCAGVDLVDPLSAEVSKRP RSELTEVSSHTGKDVCENIQDPNGQVGHSWGWDDEGVVMDINILLSEFGDFSDFFQQEELDFGE PPGTAESHALVIPASDCGDVTFTDSPSTAMDIPEQRLSPVGFTTLDAFDHQIMAPAQDVVAKVQ EPHNDTATPAQSHSQVLSSGRFDYLTKAEAKLTFAPEYAAVEILIAEAPTPLFTNPYFPRSKKP GSSSFSARVYSYDVAQSSQIESTGDKPDKTSKLISGNHLHDISSSNLYTLVQGGNKGSDKILKS TDTQPSKGELSPPISGVTSFNFSLVSQKKSGNMFNAGYFLLSMKTALATEIECITFQAAMCRIR HTLLSLRSKASAEFNSATSSFIQTNVSNKSDLTPRSLMDNVGVWRPVVTPKGPKSLESLSANTL TGASPSLSIQRQPVVDLLCAMTLLVQQSTSFVDMSLDMDDGDGSFFWLSLDEQKRRGFSCDPSM VHAGCGGLLGTCHSKDCAGVDLVDPLSAE(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |