Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Zm00001d045603_circ_g.1 |
| ID in PlantcircBase | zma_circ_009906 |
| Alias | zma_circ_0003193 |
| Organism | Zea mays |
| Position | chr9: 28450021-28452252 JBrowse» |
| Reference genome | AGPv4.38 |
| Type | u-circRNA |
| Identification method | find_circ |
| Parent gene | Zm00001d045603 |
| Parent gene annotation |
polymerase II transcription-mediator3 |
| Parent gene strand | + |
| Alternative splicing | NA |
| Support reads | NA |
| Tissues | leaf, root |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AG |
| Number of exons covered | Zm00001d045603_T023:3 Zm00001d045603_T029:3 Zm00001d045603_T003:4 Zm00001d045603_T062:2 Zm00001d045603_T027:2 Zm00001d045603_T058:3 Zm00001d045603_T041:3 Zm00001d045603_T016:2 Zm00001d045603_T012:3 Zm00001d045603_T020:3 Zm00001d045603_T018:3 Zm00001d045603_T007:2 Zm00001d045603_T021:2 Zm00001d045603_T053:3 Zm00001d045603_T024:3 Zm00001d045603_T061:3 Zm00001d045603_T068:2 Zm00001d045603_T015:3 Zm00001d045603_T011:2 Zm00001d045603_T036:3 Zm00001d045603_T010:3 Zm00001d045603_T033:3 Zm00001d045603_T051:3 Zm00001d045603_T056:3 Zm00001d045603_T054:3 Zm00001d045603_T001:3 Zm00001d045603_T059:2 Zm00001d045603_T005:3 Zm00001d045603_T035:4 Zm00001d045603_T034:3 Zm00001d045603_T064:2 Zm00001d045603_T047:3 Zm00001d045603_T028:2 Zm00001d045603_T043:3 Zm00001d045603_T066:2 Zm00001d045603_T009:2 Zm00001d045603_T026:3 Zm00001d045603_T049:3 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.209990136 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
28450151-28452249(+) |
| Potential amino acid sequence |
MDINILLSEFGDFSDFFQQEELDFGEPPGTAESHALVIPASDCGDVTFTDSPSTAMDIPEQRLS PVGFTTLDAFDHQIMAPAQDVVAKVQEPHNDTATPAQSHSQVLSSGRFDYLTKAEAKLTFAPEY AAVEILIAEAPTPLFTNPYFPRSKKPGSSSFSARVYSYDVAQSSQIESTGDKPDKTSKLISGNH LHDISSSNLYTLVQGGNKGSDKILKSTDTQPSKGELSPPISGVTSFNFSLVSQKKSGNMFNAGY FLLSMKTALATEIECITFQAAMCRIRHTLLSLRSKASAEFNSATSSFIQTNVSNKSDLTPRSLM DNVGVWRPVVTPKGPKSLESLSANTLTGASPSLSIQRQPVVDLLCAMTLLVQQSTSFVDMSLDM DDGDGSFFWLSLDEQKRRGFSCDPSMVHAGCGGLLGTCHSKDCAGVDLVDPLSAEVSKRPRSEL TEVSSHTGKDVCENIQDPNGQVGHSWGWDDEGVVMDINILLSEFGDFSDFFQQEELDFGEPPGT AESHALVIPASDCGDVTFTDSPSTAMDIPEQRLSPVGFTTLDAFDHQIMAPAQDVVAKVQEPHN DTATPAQSHSQVLSSGRFDYLTKAEAKLTFAPEYAAVEILIAEAPTPLFTNPYFPRSKKPGSSS FSARVYSYDVAQSSQIESTGDKPDKTSKLISGNHLHDISSSNLYTLVQGGNKGSDKILKSTDTQ PSKGELSPPISGVTSFNFSLVSQKKSGNMFNAGYFLLSMKTALATEIECITFQAAMCRIRHTLL SLRSKASAEFNSATSSFIQTNVSNKSDLTPRSLMDNVGVWRPVVTPKGPKSLESLSANTLTGAS PSLSIQRQPVVDLLCAMTLLVQQSTSFVDMSLDMDDGDGSFFWLSLDEQKRRGFSCDPSMVHAG CGGLLGTCHSKDCAGVDLVDPLSAEVSKRPRSELTEVSSHTGKDVCENIQDPNGQVGHSWGWDD EGVVMDINILLSEFGDFSDFFQQEELDFGEPPGTAESHALVIPASDCGDVTFTDSPSTAMDIPE QRLSPVGFTTLDAFDHQIMAPAQDVVAKVQEPHNDTATPAQSHSQVLSSGRFDYLTKAEAKLTF APEYAAVEILIAEAPTPLFTNPYFPRSKKPGSSSFSARVYSYDVAQSSQIESTGDKPDKTSKLI SGNHLHDISSSNLYTLVQGGNKGSDKILKSTDTQPSKGELSPPISGVTSFNFSLVSQKKSGNMF NAGYFLLSMKTALATEIECITFQAAMCRIRHTLLSLRSKASAEFNSATSSFIQTNVSNKSDLTP RSLMDNVGVWRPVVTPKGPKSLESLSANTLTGASPSLSIQRQPVVDLLCAMTLLVQQSTSFVDM SLDMDDGDGSFFWLSLDEQKRRGFSCDPSMVHAGCGGLLGTCHSKDCAGVDLVDPLSAEVSKRP RSELTEVSSHTGKDVCENIQDPNGQVGHSWGWDDEGVVMDINILLSEFGDFSDFFQQEELDFGE PPGTAESHALVIPASDCGDVTFTDSPSTAMDIPEQRLSPVGFTTLDAFDHQIMAPAQDVVAKVQ EPHNDTATPAQSHSQVLSSGRFDYLTKAEAKLTFAPEYAAVEILIAEAPTPLFTNPYFPRSKKP GSSSFSARVYSYDVAQSSQIESTGDKPDKTSKLISGNHLHDISSSNLYTLVQGGNKGSDKILKS TDTQPSKGELSPPISGVTSFNFSLVSQKKSGNMFNAGYFLLSMKTALATEIECITFQAAMCRIR HTLLSLRSKASAEFNSATSSFIQTNVSNKSDLTPRSLMDNVGVWRPVVTPKGPKSLESLSANTL TGASPSLSIQRQPVVDLLCAMTLLVQQSTSFVDMSLDMDDGDGSFFWLSLDEQKRRGFSCDPSM VHAGCGGLLGTCHSKDCAGVDLVDPLSAE(+) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Ma et al., 2021b |