Plant Circular RNA Database

Detail information of Os03g0830900_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os03g0830900_circ_g.2
					
						ID in PlantcircBase
						osa_circ_022557
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr3: 34897501-34899416  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os03g0830900						
					
						Parent gene annotation
						
							Lipase, class 3 family protein. (Os03t0830900-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os03g0830900_circ_g.3 Os03g0830900_circ_g.4 						
					
						Support reads
						2
					
						Tissues
						shoot, root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os03t0830900-01:5

General Information
CircRNA Name	Os03g0830900_circ_g.2
ID in PlantcircBase	osa_circ_022557
Alias	NA
Organism	Oryza sativa
Position	chr3: 34897501-34899416 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os03g0830900
Parent gene annotation	Lipase, class 3 family protein. (Os03t0830900-01)
Parent gene strand	-
Alternative splicing	Os03g0830900_circ_g.3 Os03g0830900_circ_g.4
Support reads	2
Tissues	shoot, root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os03t0830900-01:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AAATCTTCAAGTGCTCAAGTAGATAAGCTACTTCAGTGTGTGCGTCGTGACCTTTTAGTTGAAG
GCAATCATTTCCACTATACTCATGCTGCAAATCACCctcagatatgctagaatcaggatctgtg
ttcttctctgttggatgagatactgacagcatatgagactttatgaaagctacacgcttactta
ttgccgta

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 843
Transcript exons: 34897501-34897656,34897968-34898086,34898505-34898607,34
898841-34899113,34899225-34899416
CTCAGATATGCTAGAATCAGGATCTGTGTTCTTCTCTGTTGGATGAGATACTGACAGCATATGA
GACTTTATGAAAGCTACACGCTTACTTATTGCCGTAAATAAGCTAAAGTGAGCTTGATCCTGCT
CATCATCTAGCTTTGATGATACCATTACCTCAGCTCGCAGGTTCTCAGCAGAAACTTTTGAAAA
GGCCGGGACCACATCATTTCTGTTGATGAGAGAAGTGACAAATTCTTTGCCCGACTCCGCCAGC
TCCCATGACATACAGGCAGGAGGAGCAAATGCCAGACACGTGCACGATGAGAACTCATGATGCT
CATGAAGAATGTATGTCAGAATTGCTCCGATACCTGCTCCCATTGAATGCCCAATGACCTTTAT
TTGATAATCAGGGAATTCTTGTACTGCCTTGTGAAGATGGGGCTTGGCAAGGTTAGCAATCCAA
CGAGCTGCAGCAAGCATCCCACAATGTGCATATCCTAAAACCACGTTGCTGATTTGTCCTTCAC
TTAAAACTATATGGTGAAAAGGAACCTCAGCAGCAGTTGCGGCTGTTAGGCGCTCCTTAGTACT
GATAGCACCCCGAATGAAAAGCAGAAAGCACTTGGATTTTTTGTCACACACAAGCGCGAAAGAA
GGTTGCATAAGCCTCGCCCTAGCCTTGTGAATAAGAATGTCTTCTTGATTGTACCCACCAAACT
GAAGAAACGCTGAAAATGTTTTCTTTGAGTAGAACATGCAAATCTTCAAGTGCTCAAGTAGATA
AGCTACTTCAGTGTGTGCGTCGTGACCTTTTAGTTGAAGGCAATCATTTCCACTATACTCATGC
TGCAAATCACC
						
					

						Genomic sequence
						
							CTCAGATATGCTAGAATCAGGATCTGTGTTCTTCTCTGTTGGATGAGATACTGACAGCATATGA
GACTTTATGAAAGCTACACGCTTACTTATTGCCGTAAATAAGCTAAAGTGAGCTTGATCCTGCT
CATCATCTAGCTTTGATGATACCATTACCTGCAGTAGAGACAAAAAAATCAGTGATGATAGAAC
ACTGTTGGGAATCAGGTATATGGTCGTTTTCACAATTTATCAGAAATTTTATATGGCCACTGTC
CAGTATGCCAATGAGGTTAACATTTCAAGTTTGAAGCTAAGATCTCCATTGCATCACATATTTC
TTGAAATATCACAAGAAATTAATGTATTAACACTTTGCTAAGTTCTTAAAATGTTTCCTTGTTA
ATTACAAAAGAAGTTCATACTAGTGAAGGTCTGATTTTATTATGCTGACACATAAGACACTGGC
CATCAGAAATTCAGAGTACCTCAGCTCGCAGGTTCTCAGCAGAAACTTTTGAAAAGGCCGGGAC
CACATCATTTCTGTTGATGAGAGAAGTGACAAATTCTTTGCCCGACTCCGCCAGCTCCCATGAC
ATACAGGCAGCTATACAAAACAGGAACCCTTTAAAAATCTGAAAGCATTTCCTCTCTTAAATCT
AGAAAATAGTATAACTGTCTCAGTTCCTGGATTAACTTGTAGCCTAATAAAATAAATCTTGCAA
GTCAATGCAATTCTATCATATCTGTATAAAACAATGGCTAATTCTCCATCACTGTCCAATAATG
CAAATTGTACACAAGAACGTTCAACCAAACAGTTGGCATGGATGAGATCATGAGAACATAGTGC
CAAAACAACTTTTGTCACCCATTAAGTACTGAAACAGAACAAAGTTACAACTCAGGAAAATAAT
ATAAGAAAACACCTGATAATCATAAAGCCATATAATATCTCGAAGGCACAATGCAAAAACTAAG
CAAAGTGTGGCTTTAAAGATGTAAATCATGAATAAGTCACTTACGAGGAGCAAATGCCAGACAC
GTGCACGATGAGAACTCATGATGCTCATGAAGAATGTATGTCAGAATTGCTCCGATACCTGCTC
CCATTGAATGCCCAATGACCTAGTACAAATGACAAATAAGGAGACATAATTTGGGTCAGAAATC
TTCACAAAAATAAACATGACATAAAAGACAAAAGGAGAGATCTGATTACGCTTCTTAACTGTCT
CAGTGATATTTATCAAAAACAAATTATTTCAAATAAGGTCATGTATATAGATCACAGCGCACTG
CAGCGGCTACACCTATAAATTGTAGTCACTTCATCCATGCATAGCACTAATAAGAAATACCTTT
ATTTGATAATCAGGGAATTCTTGTACTGCCTTGTGAAGATGGGGCTTGGCAAGGTTAGCAATCC
AACGAGCTGCAGCAAGCATCCCACAATGTGCATATCCTAAAACCACGTTGCTGATTTGTCCTTC
ACTTAAAACTATATGGTGAAAAGGAACCTCAGCAGCAGTTGCGGCTGTTAGGCGCTCCTTAGTA
CTGATAGCACCCCGAATGAAAAGCAGAAAGCACTTGGATTTTTTGTCACACACAAGCGCGAAAG
AAGGTTGCATAAGCTGCATCAAGTTGATAGTTAAGAGTGAGTCAAAATGTGGAGGAACAAATAC
AAATTGTAAATGTGAGTACCTTAAGCATGAGATAAGAGGAATACAGTGATACTTACTCACCCTC
GCCCTAGCCTTGTGAATAAGAATGTCTTCTTGATTGTACCCACCAAACTGAAGAAACGCTGAAA
ATGTTTTCTTTGAGTAGAACATGCAAATCTTCAAGTGCTCAAGTAGATAAGCTACTTCAGTGTG
TGCGTCGTGACCTTTTAGTTGAAGGCAATCATTTCCACTATACTCATGCTGCAAATCACC
						
					

			
		

Sequences
Splice junction sequence	AAATCTTCAAGTGCTCAAGTAGATAAGCTACTTCAGTGTGTGCGTCGTGACCTTTTAGTTGAAG GCAATCATTTCCACTATACTCATGCTGCAAATCACCctcagatatgctagaatcaggatctgtg ttcttctctgttggatgagatactgacagcatatgagactttatgaaagctacacgcttactta ttgccgta
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 843 Transcript exons: 34897501-34897656,34897968-34898086,34898505-34898607,34 898841-34899113,34899225-34899416 CTCAGATATGCTAGAATCAGGATCTGTGTTCTTCTCTGTTGGATGAGATACTGACAGCATATGA GACTTTATGAAAGCTACACGCTTACTTATTGCCGTAAATAAGCTAAAGTGAGCTTGATCCTGCT CATCATCTAGCTTTGATGATACCATTACCTCAGCTCGCAGGTTCTCAGCAGAAACTTTTGAAAA GGCCGGGACCACATCATTTCTGTTGATGAGAGAAGTGACAAATTCTTTGCCCGACTCCGCCAGC TCCCATGACATACAGGCAGGAGGAGCAAATGCCAGACACGTGCACGATGAGAACTCATGATGCT CATGAAGAATGTATGTCAGAATTGCTCCGATACCTGCTCCCATTGAATGCCCAATGACCTTTAT TTGATAATCAGGGAATTCTTGTACTGCCTTGTGAAGATGGGGCTTGGCAAGGTTAGCAATCCAA CGAGCTGCAGCAAGCATCCCACAATGTGCATATCCTAAAACCACGTTGCTGATTTGTCCTTCAC TTAAAACTATATGGTGAAAAGGAACCTCAGCAGCAGTTGCGGCTGTTAGGCGCTCCTTAGTACT GATAGCACCCCGAATGAAAAGCAGAAAGCACTTGGATTTTTTGTCACACACAAGCGCGAAAGAA GGTTGCATAAGCCTCGCCCTAGCCTTGTGAATAAGAATGTCTTCTTGATTGTACCCACCAAACT GAAGAAACGCTGAAAATGTTTTCTTTGAGTAGAACATGCAAATCTTCAAGTGCTCAAGTAGATA AGCTACTTCAGTGTGTGCGTCGTGACCTTTTAGTTGAAGGCAATCATTTCCACTATACTCATGC TGCAAATCACC
Genomic sequence	CTCAGATATGCTAGAATCAGGATCTGTGTTCTTCTCTGTTGGATGAGATACTGACAGCATATGA GACTTTATGAAAGCTACACGCTTACTTATTGCCGTAAATAAGCTAAAGTGAGCTTGATCCTGCT CATCATCTAGCTTTGATGATACCATTACCTGCAGTAGAGACAAAAAAATCAGTGATGATAGAAC ACTGTTGGGAATCAGGTATATGGTCGTTTTCACAATTTATCAGAAATTTTATATGGCCACTGTC CAGTATGCCAATGAGGTTAACATTTCAAGTTTGAAGCTAAGATCTCCATTGCATCACATATTTC TTGAAATATCACAAGAAATTAATGTATTAACACTTTGCTAAGTTCTTAAAATGTTTCCTTGTTA ATTACAAAAGAAGTTCATACTAGTGAAGGTCTGATTTTATTATGCTGACACATAAGACACTGGC CATCAGAAATTCAGAGTACCTCAGCTCGCAGGTTCTCAGCAGAAACTTTTGAAAAGGCCGGGAC CACATCATTTCTGTTGATGAGAGAAGTGACAAATTCTTTGCCCGACTCCGCCAGCTCCCATGAC ATACAGGCAGCTATACAAAACAGGAACCCTTTAAAAATCTGAAAGCATTTCCTCTCTTAAATCT AGAAAATAGTATAACTGTCTCAGTTCCTGGATTAACTTGTAGCCTAATAAAATAAATCTTGCAA GTCAATGCAATTCTATCATATCTGTATAAAACAATGGCTAATTCTCCATCACTGTCCAATAATG CAAATTGTACACAAGAACGTTCAACCAAACAGTTGGCATGGATGAGATCATGAGAACATAGTGC CAAAACAACTTTTGTCACCCATTAAGTACTGAAACAGAACAAAGTTACAACTCAGGAAAATAAT ATAAGAAAACACCTGATAATCATAAAGCCATATAATATCTCGAAGGCACAATGCAAAAACTAAG CAAAGTGTGGCTTTAAAGATGTAAATCATGAATAAGTCACTTACGAGGAGCAAATGCCAGACAC GTGCACGATGAGAACTCATGATGCTCATGAAGAATGTATGTCAGAATTGCTCCGATACCTGCTC CCATTGAATGCCCAATGACCTAGTACAAATGACAAATAAGGAGACATAATTTGGGTCAGAAATC TTCACAAAAATAAACATGACATAAAAGACAAAAGGAGAGATCTGATTACGCTTCTTAACTGTCT CAGTGATATTTATCAAAAACAAATTATTTCAAATAAGGTCATGTATATAGATCACAGCGCACTG CAGCGGCTACACCTATAAATTGTAGTCACTTCATCCATGCATAGCACTAATAAGAAATACCTTT ATTTGATAATCAGGGAATTCTTGTACTGCCTTGTGAAGATGGGGCTTGGCAAGGTTAGCAATCC AACGAGCTGCAGCAAGCATCCCACAATGTGCATATCCTAAAACCACGTTGCTGATTTGTCCTTC ACTTAAAACTATATGGTGAAAAGGAACCTCAGCAGCAGTTGCGGCTGTTAGGCGCTCCTTAGTA CTGATAGCACCCCGAATGAAAAGCAGAAAGCACTTGGATTTTTTGTCACACACAAGCGCGAAAG AAGGTTGCATAAGCTGCATCAAGTTGATAGTTAAGAGTGAGTCAAAATGTGGAGGAACAAATAC AAATTGTAAATGTGAGTACCTTAAGCATGAGATAAGAGGAATACAGTGATACTTACTCACCCTC GCCCTAGCCTTGTGAATAAGAATGTCTTCTTGATTGTACCCACCAAACTGAAGAAACGCTGAAA ATGTTTTCTTTGAGTAGAACATGCAAATCTTCAAGTGCTCAAGTAGATAAGCTACTTCAGTGTG TGCGTCGTGACCTTTTAGTTGAAGGCAATCATTTCCACTATACTCATGCTGCAAATCACC

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_005231* 						
					
						PMCS
						0.379695638

Conservation Information
Conserved circRNAs	osi_circ_005231*
PMCS	0.379695638

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							34899403-34897551(+)
34899294-34897511(+)
34899316-34897503(-)
						
						Potential amino acid sequence
						
							MLQITLRYARIRICVLLCWMRY*(+)
MFSLSRTCKSSSAQVDKLLQCVRRDLLVEGNHFHYTHAANHPQIC*(+)
MFYSKKTFSAFLQFGGYNQEDILIHKARARLMQPSFALVCDKKSKCFLLFIRGAISTKERLTAA
TAAEVPFHHIVLSEGQISNVVLGYAHCGMLAAARWIANLAKPHLHKAVQEFPDYQIKVIGHSMG
AGIGAILTYILHEHHEFSSCTCLAFAPPACMSWELAESGKEFVTSLINRNDVVPAFSKVSAENL
RAEVMVSSKLDDEQDQAHFSLFTAISKRVAFIKSHMLSVSHPTEKNTDPDSSISEGDLQHEYSG
NDCLQLKGHDAHTEVAYLLEHLKICMFYSKKTFSAFLQFGGYNQEDILIHKARARLMQPSFALV
CDKKSKCFLLFIRGAISTKERLTAATAAEVPFHHIVLSEGQISNVVLGYAHCGMLAAARWIANL
AKPHLHKAVQEFPDYQIKVIGHSMGAGIGAILTYILHEHHEFSSCTCLAFAPPACMSWELAESG
KEFVTSLINRNDVVPAFSKVSAENLRAEVMVSSKLDDEQDQAHFSLFTAISKRVAFIKSHMLSV
SHPTEKNTDPDSSISEGDLQHEYSGNDCLQLKGHDAHTEVAYLLEHLKICMFYSKKTFSAFLQF
GGYNQEDILIHKARARLMQPSFALVCDKKSKCFLLFIRGAISTKERLTAATAAEVPFHHIVLSE
GQISNVVLGYAHCGMLAAARWIANLAKPHLHKAVQEFPDYQIKVIGHSMGAGIGAILTYILHEH
HEFSSCTCLAFAPPACMSWELAESGKEFVTSLINRNDVVPAFSKVSAENLRAEVMVSSKLDDEQ
DQAHFSLFTAISKRVAFIKSHMLSVSHPTEKNTDPDSSISEGDLQHEYSGNDCLQLKGHDAHTE
VAYLLEHLKICMFYSKKTFSAFLQFGGYNQEDILIHKARARLMQPSFALVCDKKSKCFLLFIRG
AISTKERLTAATAAEVPFHHIVLSEGQISNVVLGYAHCGMLAAARWIANLAKPHLHKAVQEFPD
YQIKVIGHSMGAGIGAILTYILHEHHEFSSCTCLAFAPPACMSWELAESGKEFVTSLINRNDVV
PAFSKVSAENLRAEVMVSSKLDDEQDQAHFSLFTAISKRVAFIKSHMLSVSHPTEKNTDPDSSI
SE(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	34899403-34897551(+) 34899294-34897511(+) 34899316-34897503(-)
Potential amino acid sequence	MLQITLRYARIRICVLLCWMRY(+) MFSLSRTCKSSSAQVDKLLQCVRRDLLVEGNHFHYTHAANHPQIC(+) MFYSKKTFSAFLQFGGYNQEDILIHKARARLMQPSFALVCDKKSKCFLLFIRGAISTKERLTAA TAAEVPFHHIVLSEGQISNVVLGYAHCGMLAAARWIANLAKPHLHKAVQEFPDYQIKVIGHSMG AGIGAILTYILHEHHEFSSCTCLAFAPPACMSWELAESGKEFVTSLINRNDVVPAFSKVSAENL RAEVMVSSKLDDEQDQAHFSLFTAISKRVAFIKSHMLSVSHPTEKNTDPDSSISEGDLQHEYSG NDCLQLKGHDAHTEVAYLLEHLKICMFYSKKTFSAFLQFGGYNQEDILIHKARARLMQPSFALV CDKKSKCFLLFIRGAISTKERLTAATAAEVPFHHIVLSEGQISNVVLGYAHCGMLAAARWIANL AKPHLHKAVQEFPDYQIKVIGHSMGAGIGAILTYILHEHHEFSSCTCLAFAPPACMSWELAESG KEFVTSLINRNDVVPAFSKVSAENLRAEVMVSSKLDDEQDQAHFSLFTAISKRVAFIKSHMLSV SHPTEKNTDPDSSISEGDLQHEYSGNDCLQLKGHDAHTEVAYLLEHLKICMFYSKKTFSAFLQF GGYNQEDILIHKARARLMQPSFALVCDKKSKCFLLFIRGAISTKERLTAATAAEVPFHHIVLSE GQISNVVLGYAHCGMLAAARWIANLAKPHLHKAVQEFPDYQIKVIGHSMGAGIGAILTYILHEH HEFSSCTCLAFAPPACMSWELAESGKEFVTSLINRNDVVPAFSKVSAENLRAEVMVSSKLDDEQ DQAHFSLFTAISKRVAFIKSHMLSVSHPTEKNTDPDSSISEGDLQHEYSGNDCLQLKGHDAHTE VAYLLEHLKICMFYSKKTFSAFLQFGGYNQEDILIHKARARLMQPSFALVCDKKSKCFLLFIRG AISTKERLTAATAAEVPFHHIVLSEGQISNVVLGYAHCGMLAAARWIANLAKPHLHKAVQEFPD YQIKVIGHSMGAGIGAILTYILHEHHEFSSCTCLAFAPPACMSWELAESGKEFVTSLINRNDVV PAFSKVSAENLRAEVMVSSKLDDEQDQAHFSLFTAISKRVAFIKSHMLSVSHPTEKNTDPDSSI SE(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os03g0830900_circ_g.2

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