Detail information of AT1G29850_circ_g.5


General Information
CircRNA Name AT1G29850_circ_g.5
ID in PlantcircBase ath_circ_004853
Alias At_ciR5067
Organism Arabidpsis thaliana
Position chr1: 10448849-10449480  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ
Parent gene AT1G29850
Parent gene annotation double-stranded DNA-binding family protein
Parent gene strand +
Alternative splicing AT1G29850_circ_g.1 AT1G29850_circ_g.2 AT1G29850_circ_g.3 AT1G29850_circ_g.4
Support reads 2
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT1G29850.3:4
AT1G29850.2:4
AT1G29850.1:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGTGAACTATACTCTGTTTGCTTTACAGGTTTCTGAGGAACGGCTTATAACACTGTTGGAACAA
ATAAACAGCCAAACTACCAAGCAAACGAAAGTCACGggtaagcagggcaatcagcagaatccag
agcaagagaaacagcaggaagatgctaaaaggtgtgtatcattgtctattagttgacatgtatt
atgtatat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTAAGCAGGGCAATCAGCAGAATCCAGAGCAAGAGAAACAGCAGGAAGATGCTAAAAGGTGTG
TATCATTGTCTATTAGTTGACATGTATTATGTATATGAATTTGGAATTGTATATTTAAACTAAT
GTATTCTCTGATTGGAACATTCGTGTAGGGAAGCTGATGAACGTAGGCAAATGATGCTTAGTCA
AGTATTGTCTTCTCAAGCCCGAGAGAGAAGTAAGTCTCATCTAAAAATGTGTTGGAGTTCATCT
AGTTACTCTCCCTTTCTTCTTCATTATGTCATTATTATATCTTTTATGTTTCTCTTTCTTTCTT
TTTTTCGATAGTTGCTCGAATTGCTCTGGTGAAACCTGAGAAAGCTAGAGGTGTGGAGGATGTT
ATTTTGAGGGCTGCTCAGATGGGACAGATAGTTGAGAAGGTAAAAAAATTCAGTCACTTTTCAA
TGTCATAGTTCAGAATTCTTACACATCATATGGTTTCTACTCAAGTGCCGCTGGTACTACACGA
GTGTTATGCATCAAAGAGTTCGTGAACTATACTCTGTTTGCTTTACAGGTTTCTGAGGAACGGC
TTATAACACTGTTGGAACAAATAAACAGCCAAACTACCAAGCAAACGAAAGTCACG
Conservation Information
Conserved circRNAs NA
PMCS 0.181406448
Functional Information
Coding potential Y
Potential coding position 10449027-10449477(+)
Potential amino acid sequence MMLSQVLSSQARERIARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINSQTTK
QTKVTGKQGNQQNPEQEKQQEDAKREADERRQMMLSQVLSSQARERIARIALVKPEKARGVEDV
ILRAAQMGQIVEKVSEERLITLLEQINSQTTKQTKVTGKQGNQQNPEQEKQQEDAKREADERRQ
MMLSQVLSSQARERIARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINSQTTK
QTKVTGKQGNQQNPEQEKQQEDAKREADERRQMMLSQVLSSQARERIARIALVKPEKARGVEDV
ILRAAQMGQIVEKVSEERLITLLEQINSQTTKQTKVT(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015