Detail information of AT2G39090_circ_g.2


General Information
CircRNA Name AT2G39090_circ_g.2
ID in PlantcircBase ath_circ_017333
Alias Ath_circ_FC1573
Organism Arabidpsis thaliana
Position chr2: 16313634-16317054  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder
Parent gene AT2G39090
Parent gene annotation AtAPC7
Parent gene strand -
Alternative splicing AT2G39090_circ_g.1 AT2G39090_circ_g.3 AT2G39090_circ_g.4 AT2G39090_circ_g.5
Support reads 1
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G39090.1:14
AT2G39090.2:14
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAGAAAATATCGACGGAGAAAGAAGCTTAACCAAATTCTCCGCCTTGAGCTGAGGACTAGTTTC
GGCACTAACAGTAGGAGAAGAAACGAGAAAGCAGCCcttttccctgccacttgatgtaaacgca
tgaacatcaccaactaatttcagagccttcgcggattgaggcattgcattcattgcttccctgg
cggtatac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTTCCCTGCCACTTGATGTAAACGCATGAACATCACCAACTAATTTCAGAGCCTTCGCGGAT
TGAGGCATTGCATTCATTGCTTCCCTGGCGGTATACAATGCTTCTTTGGTTTTACCAAATGCAA
GATAAGAATGGACTAAGCCTGAAATGACCTCAATAGCGCAAGTTAATTACACACTCCAACCTTT
TCATGATTGTTAAAGGTTTATACCACCAAAACAGTACAACAGTGGAAGTGTATATCAGATCTTT
TTCCCTCGTGAACCAGACCTTGATATGAACGAAGATCGGACCTCAAATTCTGGGCAGCCCTGAA
GGCGATCGCTGCAGCTTCTGGTCGTTTTGCTTGTAAAAGTAGATTTCCCTGACGTCTTAACAAA
TTAGTGGATATATATATATATGCAAACTTACTAAAAATAAATAAACTCCTCGTTGAACTAGCTT
ACCTTCATTATGTAGCCGGGTATGTGCCTCTCGTCTACCCTGATACTCTGATTGCATAGTGTAT
GTCATGAGCTATCACACAAAGATTTTGGCACAAAAATTCAGTGTCAGAAAAAAGCTAACCTTCT
CAGCATAAGATAATGCCGTCCTTGCATCTTTCCTTTCCCATAGTACAGACAAAGCAACAAATAC
TTCTGCTCTGGTATGATCAACGCTTAATAAATCGTGGACGAGCTTGTTTAGCCTGGAATAATCA
CACTTAATCTGAAGCAGCATCGCATACTCATCCATACTGGTTAGTGTGTAAGGATCAATTGACC
GAACCTATAAAAGCTTTTAGATGATTATGCATGAATTAAAGAAGTTGAGAATTGAGAAAAAAAT
ATCCATGTGGTGACTACCTTCTCAAATCTCATTATGGCCTCATCATTTTTCCCAATAATGGCTT
CAACCTATACAAATGAAATAAATGTCAATCAGCGTCAGTCATGATAAAATGAAAAATTCAGGTG
AAATTCTGTTTGCATCGTAGTCGATGTCATCCCTAACCTTTGCTGTCTCAGTCAACAAGTGTAC
ATTATTTGGAAATCGTTGTAAGAGTTCAGCAAAGAGTTCCAGCGCCCCTGAGTAACAAAAAAAT
ATTACACCATATCCAGTAAAGCAAGCATCAGATTGCAGAATTTCCCACAAATAAAATGCAAGAA
ATGAAATCTACAAGGTTAAAAAAAAAGAACTAAATGCCTTATTTCATCCATTGTAGGCATAGGC
ATCCCAAAAAGAAAAGAGAGCTACCTTTGTAAGCATGCGAAGCAACACAACACTGGGCCTCTAC
ATAACGCTGTGAAAACAAAGAAAAATTACCGAAAAAGACAAAGAAGAAAATAGATTTTATTGCC
AGGTATGCTACAACATGAAACCAATGAAACATCCATCCAAGAAAAGTTATGTGGAGTATTAGTT
TCCTGGTTAAATAGTCGAGCTTCTACTAACACAAGAACATCAAAGCACTACTTTGTTAAAGGGA
ATAATACTATTAAGACGATTTATTCACTTTCCACACATGAACAGCTTGAAGACAGAATTCTTAG
AATCATTATATATGAAGTCGTATTCGGGGGAAAATAGTTGATAAAATAAGATTCTAACTCACGT
ACAATAATCAGCTTGGCGGCATGATTAATGAGTGTACTTTCAAACAATTTTCAACGTTGTAAAT
CCTGTTAAAGAGTAAGCTTACTTGCAACCAGCGGGTAGGATCTATCTGATCGAGTGAAACCTTT
GCACTTCTATTTGAAGTCTGAAATGAACAAATGACACAACAAATTACAAAGTTGTATGGATTTC
ACACAGAAAAGGTAATTGCAAAATAGAGAGAAAGAGGTGCAAAACACATTTGAAGAAGTGGTGA
AAGAAATCTCGTAGAAAGGGACACCTGAGTAAACGATGATATGATATCCTTTGCACTAACTCCC
AGTTCAGCTAAACCTATGACGGCTTCAAGTACATAAGGACACTGCCTGCAGAGATTAAAGATTA
TATATATGTTTACTATGTGTTGAATTGGTATTTAACGTAAAAAGTGAGATATTATAACAGTGTT
TCTATGCTAGGAAATGTTGGGAAAGAAAACGAAAAACAGACCTTAAACACTCTTTATAAAAAGC
AATAGCACCACGGTTGTATCCAGAATTTCGATGAAGCTTTGCCATCAGTATATTCATCTCTAAG
CTCCTGGTCTTGACAGATTCCATCTGGCAAAGAAATAACAAGTGCAAAAATAGATTATAGCTAA
GCAGACCATGGCTTTATCATCCCTAATACCTACATGCAGTGTTGGAAGGAATCCAATTAGTTTA
CTTGTTTTGTAATATGGATTTGCATTGATGGGAGCAGGTCAACGCAACAAAATTCAACTCACAT
TCAGGAATACTATAACAATGCATTAGTTACGGCCCAAGAATGTTTCACTGAAATTACAGTTACT
TAACTCTGGTTATAAAATACAATAGCAAGACATAAAAGTCATCCTATACAAAACCAATCTATAA
TCTTAGAAATAGAGAAATCCCTAGACAGCTCTTTTACCGTCTCATACACACATATTTTATTTTC
TATATACCAAAGTTTCTAGACCAACAAATCCAGAAGACTAAATAAATCTTGAAAACCAGACAAA
CAGATGACACTCATACCTCAGCAATCGCAGCTTTTGTTTCATTAAGAGCAAAGTGAGATGAAGC
AATCTTGAATCTCACCTAAAAGGAAAGTTAGAAAAAGAAGATGCACATGAACTCCAATGAAATT
AAACCAAACCACATCACTTTCTGGAAACTGCAACACAGTTATTTACCTCGTTCTCATTAATAGC
AGAAATGCTGGAGGCATTCACAGATGATCTGGTAGATAAAGATAATGAACTCCTCGAAATACCG
GAGCTTTGCTTCGGAATCCTTGTGTAATGATGCAACGCTTGCTTGTACGTATGCTGACAAAAAG
AAGGAATACATATTCAGAATTTCGAGATGACTTCAAAGTAATCCACAGGAAAAGAATAAGCAAT
ACAAATATAAAACTTATCTCTGCTCACTCCATAAATTCATATAATCAGAATCTTTACAATTTTA
TCATAATCCAGTCAAATTCAAGTTCCGAGAATGATTTATAGAGTTCAAATTTGAGGCAGAACTA
AACTATCGAGAACTGAGTAACATTTCCTTCACAGCAAAAGAGAAACATAAAGAATGAAACTTTT
GAGAACTTACAATAGCTCTCCGGTGTTCTCTCTGATGAAATAAAGCATCACCCAGTAGAATCTG
ATTAAAAAACACAGAAAGAATCTAACTTCAATCTAACGGACTCAGCAGCTACTAAAATAGAAAA
TATCGACGGAGAAAGAAGCTTAACCAAATTCTCCGCCTTGAGCTGAGGACTAGTTTCGGCACTA
ACAGTAGGAGAAGAAACGAGAAAGCAGCC
Conservation Information
Conserved circRNAs NA
PMCS 0.114235267
Functional Information
Coding potential Y
Potential coding position 16315833-16313636(-)
Potential amino acid sequence MESVKTRSLEMNILMAKLHRNSGYNRGAIAFYKECLRQCPYVLEAVIGLAELGVSAKDIISSFT
QTSNRSAKVSLDQIDPTRWLQRYVEAQCCVASHAYKGALELFAELLQRFPNNVHLLTETAKVEA
IIGKNDEAIMRFEKVRSIDPYTLTSMDEYAMLLQIKCDYSRLNKLVHDLLSVDHTRAEVFVALS
VLWERKDARTALSYAEKSIRVDERHIPGYIMKGNLLLQAKRPEAAAIAFRAAQNLRSDLRSYQG
LVHSYLAFGKTKEALYTAREAMNAMPQSAKALKLVGDVHAFTSSGREKGCFLVSSPTVSAETSP
QLKAENLILLGDALFHQREHRRAIHTYKQALHHYTRIPKQSSGISRSSLSLSTRSSVNASSISA
INENEVRFKIASSHFALNETKAAIAEMESVKTRSLEMNILMAKLHRNSGYNRGAIAFYKECLRQ
CPYVLEAVIGLAELGVSAKDIISSFTQTSNRSAKVSLDQIDPTRWLQRYVEAQCCVASHAYKGA
LELFAELLQRFPNNVHLLTETAKVEAIIGKNDEAIMRFEKVRSIDPYTLTSMDEYAMLLQIKCD
YSRLNKLVHDLLSVDHTRAEVFVALSVLWERKDARTALSYAEKSIRVDERHIPGYIMKGNLLLQ
AKRPEAAAIAFRAAQNLRSDLRSYQGLVHSYLAFGKTKEALYTAREAMNAMPQSAKALKLVGDV
HAFTSSGREKGCFLVSSPTVSAETSPQLKAENLILLGDALFHQREHRRAIHTYKQALHHYTRIP
KQSSGISRSSLSLSTRSSVNASSISAINENEVRFKIASSHFALNETKAAIAEMESVKTRSLEMN
ILMAKLHRNSGYNRGAIAFYKECLRQCPYVLEAVIGLAELGVSAKDIISSFTQTSNRSAKVSLD
QIDPTRWLQRYVEAQCCVASHAYKGALELFAELLQRFPNNVHLLTETAKVEAIIGKNDEAIMRF
EKVRSIDPYTLTSMDEYAMLLQIKCDYSRLNKLVHDLLSVDHTRAEVFVALSVLWERKDARTAL
SYAEKSIRVDERHIPGYIMKGNLLLQAKRPEAAAIAFRAAQNLRSDLRSYQGLVHSYLAFGKTK
EALYTAREAMNAMPQSAKALKLVGDVHAFTSSGREKGCFLVSSPTVSAETSPQLKAENLILLGD
ALFHQREHRRAIHTYKQALHHYTRIPKQSSGISRSSLSLSTRSSVNASSISAINENEVRFKIAS
SHFALNETKAAIAEMESVKTRSLEMNILMAKLHRNSGYNRGAIAFYKECLRQCPYVLEAVIGLA
ELGVSAKDIISSFTQTSNRSAKVSLDQIDPTRWLQRYVEAQCCVASHAYKGALELFAELLQRFP
NNVHLLTETAKVEAIIGKNDEAIMRFEKVRSIDPYTLTSMDEYAMLLQIKCDYSRLNKLVHDLL
SVDHTRAEVFVALSVLWERKDARTALSYAEKSIRVDERHIPGYIMKGNLLLQAKRPEAAAIAFR
AAQNLRSDLRSYQGLVHSYLAFGKTKEALYTAREAMNAMPQSAKALKLVGDVHAFTSSGREK(-
)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017;Chen et al., 2017a