Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G14300_circ_g.1 |
ID in PlantcircBase | ath_circ_002487 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 4883277-4884008 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | PcircRNA_finder |
Parent gene | AT1G14300 |
Parent gene annotation |
ARM repeat superfamily protein |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | 2 |
Tissues | whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G14300.1:3 AT1G14300.2:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.160693398 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
4883994-4883279(-) |
Potential amino acid sequence |
MHGLHIMKLVRSFCRSSGETADDQFEHVGSILVNISKTEDGRKLLLEPKRRLLKQIIRQFDSTN QLRKKGVAGTIRNCCFEAKNQLQNILLISEFLWPALLLPVAGSKIDDEKMHGLHIMKLVRSFCR SSGETADDQFEHVGSILVNISKTEDGRKLLLEPKRRLLKQIIRQFDSTNQLRKKGVAGTIRNCC FEAKNQLQNILLISEFLWPALLLPVAGSKIDDEKMHGLHIMKLVRSFCRSSGETADDQFEHVGS ILVNISKTEDGRKLLLEPKRRLLKQIIRQFDSTNQLRKKGVAGTIRNCCFEAKNQLQNILLISE FLWPALLLPVAGSKIDDEKMHGLHIMKLVRSFCRSSGETADDQFEHVGSILVNISKTEDGRKLL LEPKRRLLKQIIRQFDSTNQLRKKGVAGTIRNCCFEAKNQLQNILLISEFLWPALLLPVAGSK( -) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |