Plant Circular RNA Database

Detail information of Os03g0667700_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os03g0667700_circ_g.1
					
						ID in PlantcircBase
						osa_circ_020906
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr3: 26294729-26297291  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os03g0667700						
					
						Parent gene annotation
						
							Similar to RanBP1 domain containing protein, expressed. (Os03t06
67700-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os03g0667700_circ_g.2 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os03t0667700-01:6

General Information
CircRNA Name	Os03g0667700_circ_g.1
ID in PlantcircBase	osa_circ_020906
Alias	NA
Organism	Oryza sativa
Position	chr3: 26294729-26297291 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os03g0667700
Parent gene annotation	Similar to RanBP1 domain containing protein, expressed. (Os03t06 67700-01)
Parent gene strand	-
Alternative splicing	Os03g0667700_circ_g.2
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os03t0667700-01:6

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TGTGACACCTACCATTATTTCAGAAGCATGGGATATGTAGTCCCTCATGCCATCCTCCCAAAGT
TCGGCTGGATGATTTTGCAACTGTGATTGTACCCAGatcgtttctaataacaatagttggagtg
gactctttggaagctttctcggcaccctctttacacctaatgttgagctggccaacaccaatat
ctttccaa

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 781
Transcript exons: 26294729-26294848,26294983-26295080,26295249-26295290,26
296036-26296215,26296307-26296559,26297204-26297291
ATCGTTTCTAATAACAATAGTTGGAGTGGACTCTTTGGAAGCTTTCTCGGCACCCTCTTTACAC
CTAATGTTGAGCTGGCCAACACCAATATCTTTCCAACCATTGGCAGGATCATCATGCTTAACAT
ACACCTTGCATTTGGCTTCATAAACAACAACGATTCCTTTCTCTTCTGCCTTCTTTACAGAAGG
GCTGCTAGGTTGTTCAGGTTCAGCATCTTCATCTGCATCACCTGAAGCTTCAGCTGCACTTTTA
TTTCCTGAGATAGCTGGCTGTTGGTTAACTGAAAACAGTGTCTGGGATGGCATGCTAAAACTCT
GGGCACCCGAAGCAGAAAAAATGGATGGCATGCTTGGTGTTGAAAAGCCATTATTTGCACCAAA
CTGGAAACTCGGTTTGTTGCTATCACCAGGCATGTTTTTCTTGTCACCAAAAATGCCAGTAAAG
GCTGGCGTTTTTTGATGAGAAGCGAACGAAAACAAGTTCGGTGAACTTGAATTCTGAAATGCTG
GGGAGCTAGCTGCTGTAACTGGACCTTTCTGCCCATTATCTGGGCTTGATTGAACCGTAAACTT
GCTGTCTACAGCTGCCGGCGAAATAGTCTTCTCATCATTGGGTGGACCTGGGGACAACACCACT
GCTGAACCTGTTTTATTTTGCCTAATCCAATTGACAACATCCTTGAATTTTTCCATTATTTCAG
AAGCATGGGATATGTAGTCCCTCATGCCATCCTCCCAAAGTTCGGCTGGATGATTTTGCAACTG
TGATTGTACCCAG
						
					

						Genomic sequence
						
							ATCGTTTCTAATAACAATAGTTGGAGTGGACTCTTTGGAAGCTTTCTCGGCACCCTCTTTACAC
CTAATGTTGAGCTGGCCAACACCAATATCTTTCCAACCATTGGCAGGATCATCATGCTACAAAT
GGAAAAAGAAGCGTGAAGTACAAGCATTTTTTGCGAGTAATTAAATAGTAGAACTGGCTCCCAA
AACACAAGTTATAATTATAGAAAGAAAAGAAAAAATAATAATACATAGGAAAGCTCTAATACCT
TAACATACACCTTGCATTTGGCTTCATAAACAACAACGATTCCTTTCTCTTCTGCCTTCTTTAC
AGAAGGGCTGCTAGGTTGTTCAGGTTCAGCATCTGATCAAACATAAGAACTATGAATAAACTGG
GTTGCATAGAGAAACCGAGGAAATATTATCTCATACCCAAAAGTAACATCCCAAACATGGAAGG
GTCAGGTAAATTGGAATTTTTATTAACTGGCGTTATCTAATTTATTATTGCTAAACTAAGTCAG
ATACTCACCTTCATCTGCATCACCTGAAGCTTCAGCTGCACTTTTATTTCCTGAAAAATTAACA
ATAACAGCTTAATGTTCCAAACAGGTAGAACCATAGAGGCATATATGTCTATTTTCTACATTAG
AGTAACAAGGCGCTCTCCATAGGAGAAATTAGCGCCTTTATCATCAGAATTACAGGTGTTAGTT
GCAGGATAAGAGAAATTGTGTTGGTAAATTCATATGAAAATTCTCAAGCCAAAAACAATTTGCT
TTATTCTGAATTGCATGAATGGGACTTGAAATATTTACTGCACTACAAAAAAAGGTTTTAACTT
GACATCGGATCAACTATGAGAGCATATAAATAACTTTTAGGCCATAGGATATCAAGGTAATATC
AGCACTTGCATGTATTAATTTTCATTACAGTTACTAAATGGAAATAAGCCAATACTCACATTAG
ATAATTCCTCTTATTCAAAAAAAAAAGAGAGAGAAACAAATGTAAGTATCACTTATTTTGTTTT
ACTTGTTTTATCATTAAAGTTACTTTAAGTATGACTCTTCTTTTTTTTTGCATATTTCCCTACA
TTGTTGAATTTGAATGGTTAGACGTCATGTCCAAAAGTCAACAGTTTCATATATTTAAAAACAT
TGTTTGGGGGGGGGGGTATTTAAATCAGGGACCATAGAAAGAAAGAATGGCCAACTTTACTATG
TACAGACATTATAAAAAAAAACACGTGTTTTATTACTCCTTCCATCTGTGGAAGAACCAACACA
ATGAAGCCAGCAAAATAAGAAAAGTACCTGAGATAGCTGGCTGTTGGTTAACTGAAAACAGTGT
CTGGGATGGCATGCTAAAACTCTGGGCACCCGAAGCAGAAAAAATGGATGGCATGCTTGGTGTT
GAAAAGCCATTATTTGCACCAAACTGGAAACTCGGTTTGTTGCTATCACCAGGCATGTTTTTCT
TGTCACCAAAAATGCCTAGATATCATTATGACACAACTAGCATAAATACATAAAAAATGGAGCA
AATGTAAACATAGTATGGATATGAACTGGTGAGTAACCATACCAGTAAAGGCTGGCGTTTTTTG
ATGAGAAGCGAACGAAAACAAGTTCGGTGAACTTGAATTCTGAAATGCTGGGGAGCTAGCTGCT
GTAACTGGACCTTTCTGCCCATTATCTGGGCTTGATTGAACCGTAAACTTGCTGTCTACAGCTG
CCGGCGAAATAGTCTTCTCATCATTGGGTGGACCTGGGGACAACACCACTGCTGAACCTGTTTT
ATTTTGCCTAATCCAATTGACAACATCCTTGAATTTTTCCTAATGAGAGCAAGCAATAGCAGGA
CGCCTAAGATTAGAGAAAAGGTAGTAGACTGCTGATGGAACAACTGCAGTGCTAATAGACTACC
TAAGCAATACAAAAAGGTTTGCTGAATAAATAGCAGTCAATTCTACAAGTCAAGATCAGAGAAA
AAAGTCACAGTTCTAAAAGCATTTGGATCAATATTGTGTTCCCAAACAGAACCCAGTCTTAGGA
AGAACTGTTATAATTCAGATACTGCCCTGTGCATATGTTTATGGGTTTACACAACTGAGAAGAT
AATGAGTGGTTTTGTATTAGTATAATTTCATTTCTTGAGTTCTTTTTCCGGTGTACAGCAACCA
AAAAAAAACAAATAATTAACCCTACAGTAACTTAATAAATATAAGTTAGATACTCAATTATTCA
TAACAGTATACATGATTCTAGTTTGTATAGCTGTTTGCCAGTAAACACTTTTGATAACTACCTG
CTAGTTACAGCTTCAAAATGTGCATAAAAGAAAGATGGTGAGATACATTCCGTCAGTATTATAT
CTCAAATTGTGCAGTGCACAAAAGAGTACATTAAAAGTTTTGTACGAATGCATCAGGTTAAAAA
AAACACTACCAAATACCAAGTCTATAGGGCATGTGACACCTACCATTATTTCAGAAGCATGGGA
TATGTAGTCCCTCATGCCATCCTCCCAAAGTTCGGCTGGATGATTTTGCAACTGTGATTGTACC
CAG
						
					

			
		

Sequences
Splice junction sequence	TGTGACACCTACCATTATTTCAGAAGCATGGGATATGTAGTCCCTCATGCCATCCTCCCAAAGT TCGGCTGGATGATTTTGCAACTGTGATTGTACCCAGatcgtttctaataacaatagttggagtg gactctttggaagctttctcggcaccctctttacacctaatgttgagctggccaacaccaatat ctttccaa
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 781 Transcript exons: 26294729-26294848,26294983-26295080,26295249-26295290,26 296036-26296215,26296307-26296559,26297204-26297291 ATCGTTTCTAATAACAATAGTTGGAGTGGACTCTTTGGAAGCTTTCTCGGCACCCTCTTTACAC CTAATGTTGAGCTGGCCAACACCAATATCTTTCCAACCATTGGCAGGATCATCATGCTTAACAT ACACCTTGCATTTGGCTTCATAAACAACAACGATTCCTTTCTCTTCTGCCTTCTTTACAGAAGG GCTGCTAGGTTGTTCAGGTTCAGCATCTTCATCTGCATCACCTGAAGCTTCAGCTGCACTTTTA TTTCCTGAGATAGCTGGCTGTTGGTTAACTGAAAACAGTGTCTGGGATGGCATGCTAAAACTCT GGGCACCCGAAGCAGAAAAAATGGATGGCATGCTTGGTGTTGAAAAGCCATTATTTGCACCAAA CTGGAAACTCGGTTTGTTGCTATCACCAGGCATGTTTTTCTTGTCACCAAAAATGCCAGTAAAG GCTGGCGTTTTTTGATGAGAAGCGAACGAAAACAAGTTCGGTGAACTTGAATTCTGAAATGCTG GGGAGCTAGCTGCTGTAACTGGACCTTTCTGCCCATTATCTGGGCTTGATTGAACCGTAAACTT GCTGTCTACAGCTGCCGGCGAAATAGTCTTCTCATCATTGGGTGGACCTGGGGACAACACCACT GCTGAACCTGTTTTATTTTGCCTAATCCAATTGACAACATCCTTGAATTTTTCCATTATTTCAG AAGCATGGGATATGTAGTCCCTCATGCCATCCTCCCAAAGTTCGGCTGGATGATTTTGCAACTG TGATTGTACCCAG
Genomic sequence	ATCGTTTCTAATAACAATAGTTGGAGTGGACTCTTTGGAAGCTTTCTCGGCACCCTCTTTACAC CTAATGTTGAGCTGGCCAACACCAATATCTTTCCAACCATTGGCAGGATCATCATGCTACAAAT GGAAAAAGAAGCGTGAAGTACAAGCATTTTTTGCGAGTAATTAAATAGTAGAACTGGCTCCCAA AACACAAGTTATAATTATAGAAAGAAAAGAAAAAATAATAATACATAGGAAAGCTCTAATACCT TAACATACACCTTGCATTTGGCTTCATAAACAACAACGATTCCTTTCTCTTCTGCCTTCTTTAC AGAAGGGCTGCTAGGTTGTTCAGGTTCAGCATCTGATCAAACATAAGAACTATGAATAAACTGG GTTGCATAGAGAAACCGAGGAAATATTATCTCATACCCAAAAGTAACATCCCAAACATGGAAGG GTCAGGTAAATTGGAATTTTTATTAACTGGCGTTATCTAATTTATTATTGCTAAACTAAGTCAG ATACTCACCTTCATCTGCATCACCTGAAGCTTCAGCTGCACTTTTATTTCCTGAAAAATTAACA ATAACAGCTTAATGTTCCAAACAGGTAGAACCATAGAGGCATATATGTCTATTTTCTACATTAG AGTAACAAGGCGCTCTCCATAGGAGAAATTAGCGCCTTTATCATCAGAATTACAGGTGTTAGTT GCAGGATAAGAGAAATTGTGTTGGTAAATTCATATGAAAATTCTCAAGCCAAAAACAATTTGCT TTATTCTGAATTGCATGAATGGGACTTGAAATATTTACTGCACTACAAAAAAAGGTTTTAACTT GACATCGGATCAACTATGAGAGCATATAAATAACTTTTAGGCCATAGGATATCAAGGTAATATC AGCACTTGCATGTATTAATTTTCATTACAGTTACTAAATGGAAATAAGCCAATACTCACATTAG ATAATTCCTCTTATTCAAAAAAAAAAGAGAGAGAAACAAATGTAAGTATCACTTATTTTGTTTT ACTTGTTTTATCATTAAAGTTACTTTAAGTATGACTCTTCTTTTTTTTTGCATATTTCCCTACA TTGTTGAATTTGAATGGTTAGACGTCATGTCCAAAAGTCAACAGTTTCATATATTTAAAAACAT TGTTTGGGGGGGGGGGTATTTAAATCAGGGACCATAGAAAGAAAGAATGGCCAACTTTACTATG TACAGACATTATAAAAAAAAACACGTGTTTTATTACTCCTTCCATCTGTGGAAGAACCAACACA ATGAAGCCAGCAAAATAAGAAAAGTACCTGAGATAGCTGGCTGTTGGTTAACTGAAAACAGTGT CTGGGATGGCATGCTAAAACTCTGGGCACCCGAAGCAGAAAAAATGGATGGCATGCTTGGTGTT GAAAAGCCATTATTTGCACCAAACTGGAAACTCGGTTTGTTGCTATCACCAGGCATGTTTTTCT TGTCACCAAAAATGCCTAGATATCATTATGACACAACTAGCATAAATACATAAAAAATGGAGCA AATGTAAACATAGTATGGATATGAACTGGTGAGTAACCATACCAGTAAAGGCTGGCGTTTTTTG ATGAGAAGCGAACGAAAACAAGTTCGGTGAACTTGAATTCTGAAATGCTGGGGAGCTAGCTGCT GTAACTGGACCTTTCTGCCCATTATCTGGGCTTGATTGAACCGTAAACTTGCTGTCTACAGCTG CCGGCGAAATAGTCTTCTCATCATTGGGTGGACCTGGGGACAACACCACTGCTGAACCTGTTTT ATTTTGCCTAATCCAATTGACAACATCCTTGAATTTTTCCTAATGAGAGCAAGCAATAGCAGGA CGCCTAAGATTAGAGAAAAGGTAGTAGACTGCTGATGGAACAACTGCAGTGCTAATAGACTACC TAAGCAATACAAAAAGGTTTGCTGAATAAATAGCAGTCAATTCTACAAGTCAAGATCAGAGAAA AAAGTCACAGTTCTAAAAGCATTTGGATCAATATTGTGTTCCCAAACAGAACCCAGTCTTAGGA AGAACTGTTATAATTCAGATACTGCCCTGTGCATATGTTTATGGGTTTACACAACTGAGAAGAT AATGAGTGGTTTTGTATTAGTATAATTTCATTTCTTGAGTTCTTTTTCCGGTGTACAGCAACCA AAAAAAAACAAATAATTAACCCTACAGTAACTTAATAAATATAAGTTAGATACTCAATTATTCA TAACAGTATACATGATTCTAGTTTGTATAGCTGTTTGCCAGTAAACACTTTTGATAACTACCTG CTAGTTACAGCTTCAAAATGTGCATAAAAGAAAGATGGTGAGATACATTCCGTCAGTATTATAT CTCAAATTGTGCAGTGCACAAAAGAGTACATTAAAAGTTTTGTACGAATGCATCAGGTTAAAAA AAACACTACCAAATACCAAGTCTATAGGGCATGTGACACCTACCATTATTTCAGAAGCATGGGA TATGTAGTCCCTCATGCCATCCTCCCAAAGTTCGGCTGGATGATTTTGCAACTGTGATTGTACC CAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.215356675

Conservation Information
Conserved circRNAs	NA
PMCS	0.215356675

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							26297241-26297213(-)
26295013-26297213(-)
						
						Potential amino acid sequence
						
							MRDYISHASEIMEKFKDVVNWIRQNKTGSAVVLSPGPPNDEKTISPAAVDSKFTVQSSPDNGQK
GPVTAASSPAFQNSSSPNLFSFASHQKTPAFTGIFGDKKNMPGDSNKPSFQFGANNGFSTPSMP
SIFSASGAQSFSMPSQTLFSVNQQPAISGNKSAAEASGDADEDAEPEQPSSPSVKKAEEKGIVV
VYEAKCKVYVKHDDPANGWKDIGVGQLNIRCKEGAEKASKESTPTIVIRNDLGTITVAKSSSRT
LGGWHEGLHIPCF*(-)
MKPNARCMLSMMILPMVGKILVLASSTLGVKRVPRKLPKSPLQLLLLETIWVQSQLQNHPAELW
EDGMRDYISHASEIMEKFKDVVNWIRQNKTGSAVVLSPGPPNDEKTISPAAVDSKFTVQSSPDN
GQKGPVTAASSPAFQNSSSPNLFSFASHQKTPAFTGIFGDKKNMPGDSNKPSFQFGANNGFSTP
SMPSIFSASGAQSFSMPSQTLFSVNQQPAISGNKSAAEASGDADEDAEPEQPSSPSVKKAEEKG
IVVVYEAKCKVYVKHDDPANGWKDIGVGQLNIRCKEGAEKASKESTPTIVIRNDLGTITVAKSS
SRTLGGWHEGLHIPCF*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	26297241-26297213(-) 26295013-26297213(-)
Potential amino acid sequence	MRDYISHASEIMEKFKDVVNWIRQNKTGSAVVLSPGPPNDEKTISPAAVDSKFTVQSSPDNGQK GPVTAASSPAFQNSSSPNLFSFASHQKTPAFTGIFGDKKNMPGDSNKPSFQFGANNGFSTPSMP SIFSASGAQSFSMPSQTLFSVNQQPAISGNKSAAEASGDADEDAEPEQPSSPSVKKAEEKGIVV VYEAKCKVYVKHDDPANGWKDIGVGQLNIRCKEGAEKASKESTPTIVIRNDLGTITVAKSSSRT LGGWHEGLHIPCF(-) MKPNARCMLSMMILPMVGKILVLASSTLGVKRVPRKLPKSPLQLLLLETIWVQSQLQNHPAELW EDGMRDYISHASEIMEKFKDVVNWIRQNKTGSAVVLSPGPPNDEKTISPAAVDSKFTVQSSPDN GQKGPVTAASSPAFQNSSSPNLFSFASHQKTPAFTGIFGDKKNMPGDSNKPSFQFGANNGFSTP SMPSIFSASGAQSFSMPSQTLFSVNQQPAISGNKSAAEASGDADEDAEPEQPSSPSVKKAEEKG IVVVYEAKCKVYVKHDDPANGWKDIGVGQLNIRCKEGAEKASKESTPTIVIRNDLGTITVAKSS SRTLGGWHEGLHIPCF(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os03g0667700_circ_g.1

Address

Any questions?

Supported by