Detail information of Zm00001d042267_circ_g.3


General Information
CircRNA Name Zm00001d042267_circ_g.3
ID in PlantcircBase zma_circ_007688
Alias Zm03circ00057
Organism Zea mays
Position chr3: 158101352-158101679  JBrowse»
Reference genome AGPv4.38
Type   e-circRNA
Identification method CIRI2
Parent gene Zm00001d042267
Parent gene annotation Auxin response factor 10
Parent gene strand -
Alternative splicing Zm00001d042267_circ_g.1 Zm00001d042267_circ_g.2 Zm00001d042267_circ_g.4
Support reads NA
Tissues leaf, endosperm
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Zm00001d042267_T002:2
Zm00001d042267_T005:2
Zm00001d042267_T010:2
Zm00001d042267_T004:2
Zm00001d042267_T008:2
Zm00001d042267_T003:2
Zm00001d042267_T009:2
Zm00001d042267_T001:2
Zm00001d042267_T007:1
Zm00001d042267_T011:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCCTTCAAACCTCATCCTGAATCTCATGCCAATAGAATAATTATTTTTTACCGACTCCATATAT
TGATCGTACGGTATGATGAACTCTGAAGGGCTCGTCcttcaagtatctccaactggaatcaggc
catagtgggtcaagattttcacaaccaactattgtaccagtaaacctacaagacaagataataa
cacaccac
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 193
Transcript exons: 158101352-158101424,158101560-158101679
CTTCAAGTATCTCCAACTGGAATCAGGCCATAGTGGGTCAAGATTTTCACAACCAACTATTGTA
CCAGTAAACCTCTGCTCTGGCGCCTCTTCTCCTTCAAACCTCATCCTGAATCTCATGCCAATAG
AATAATTATTTTTTACCGACTCCATATATTGATCGTACGGTATGATGAACTCTGAAGGGCTCGT
C

Genomic sequence CTTCAAGTATCTCCAACTGGAATCAGGCCATAGTGGGTCAAGATTTTCACAACCAACTATTGTA
CCAGTAAACCTACAAGACAAGATAATAACACACCACGAATTATCACTCAAGGGTAACTACAAAT
AACGAGCAGCTACAATGAGGGGATCAGGGGACCAGGTGACATGAAGCCACAAACTACAGAAGGC
CAAATAAGGGAGTTACCTCTGCTCTGGCGCCTCTTCTCCTTCAAACCTCATCCTGAATCTCATG
CCAATAGAATAATTATTTTTTACCGACTCCATATATTGATCGTACGGTATGATGAACTCTGAAG
GGCTCGTC
Conservation Information
Conserved circRNAs NA
PMCS 0.225376936
Functional Information
Coding potential Y
Potential coding position 158101641-158101622(-)
Potential amino acid sequence MESVKNNYSIGMRFRMRFEGEEAPEQRFTGTIVGCENLDPLWPDSSWRYLKDEPFRVHHTVRSI
YGVGKK*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Han et al., 2020