Detail information of Zm00001d037114_circ_g.1


General Information
CircRNA Name Zm00001d037114_circ_g.1
ID in PlantcircBase zma_circ_002272
Alias circ1061
Organism Zea mays
Position chr6: 112862312-112863275  JBrowse»
Reference genome AGPv4.38
Type   ui-circRNA
Identification method CIRI
Parent gene Zm00001d037114
Parent gene annotation LRR receptor-like serine/threonine-protein kinase ERECTA
Parent gene strand -
Alternative splicing NA
Support reads 3
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered Zm00001d037114_T011:6
Zm00001d037114_T010:6
Zm00001d037114_T004:6
Zm00001d037114_T005:6
Zm00001d037114_T001:6
Zm00001d037114_T007:6
Zm00001d037114_T012:6
Zm00001d037114_T002:6
Zm00001d037114_T006:6
Zm00001d037114_T008:6
Zm00001d037114_T003:6
Zm00001d037114_T009:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CACAGGACGCCGCGCCAGGAGCAGTAGTCGTCGCCGGCCCAATCGTACAGTACGTTGCCGACGT
TGCGGAAGGACTTCTTGATCTCCACCAGCGCCGCCCcaagtattgaagaacctcgttccaatag
ataagcctcggtatctccccagtcagtttgttttgtgccaagtccctggagtgcacatcacatt
agaaattc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAAGTATTGAAGAACCTCGTTCCAATAGATAAGCCTCGGTATCTCCCCAGTCAGTTTGTTTTGT
GCCAAGTCCCTGGAGTGCACATCACATTAGAAATTCTGGACCATGCTAGTTGATCCACCTTATA
AGAATCATGCAACAATAGTAACTTACAGAATCTTCAAATTTGGGAGCTGTGACAATGTTGAGGG
GATCGCACCAATCAGCTGGTTGTTCTTCAATATCCTAGAAATCACAAACAGCGCCACAAGATCT
GTAAGAACTTCCAAAGCCAAAACGGCATGTATTTCTATGCACATTCCAGAGAGAAGAAGCCTCA
CAAGTTCTCCAGGTGCTTCAGCTTTGATATTGAAAATGGTATGTCGCCGTCCAAGTTGTTGAAT
GAAAAGTCCCTAAAAGAAAGAAAAAAAGGAAAGTTTGAATAAAAGCACTATATTCAGTTAAACC
CACAACCACAAGTAAACACGGGTTAATCGAAGTTGAACTTACAGCGTCCTAAGTGATGAACAAT
CGCCAATCTCATCAGGGATCTGCCCGGATAGGCCATTTGACTTGAGGTCGCTGAATGTGAATGC
AAAAGAGGCCAGTTAAACACCGGTCAGGACTCAGAAAACAAAAATCCAACCAACAGCAGTCGTT
TGGACAAATAAGAAACCATCCGTACATGGAGACGAGGCTCTTGAGGCTGCCGACGGCTGGAGAG
ATCTCACCCTCAAGGTTGAGGCCAGAGAGGTTGCTGCATTTGCATTGGCGCCATAACCCGGATC
AGTGGCCACACGTCGCTGTCGTTGGGGAAAAAAAAGAGCAGAGTTTTAACGAGACGCCATTCTT
ACAGCGCGGCGACGGCGAACGTGACGTTGTCGCACAGGACGCCGCGCCAGGAGCAGTAGTCGTC
GCCGGCCCAATCGTACAGTACGTTGCCGACGTTGCGGAAGGACTTCTTGATCTCCACCAGCGCC
GCCC
Conservation Information
Conserved circRNAs osi_circ_016776*
PMCS 0.101949689
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b