Detail information of Zm00001d036798_circ_g.3


General Information
CircRNA Name Zm00001d036798_circ_g.3
ID in PlantcircBase zma_circ_008977
Alias Zm06circ00033, zma_circ_0002101, GRMZM2G026962_C2
Organism Zea mays
Position chr6: 101224063-101226754  JBrowse»
Reference genome AGPv4.38
Type   ue-circRNA
Identification method CIRI2, find_circ
Parent gene Zm00001d036798
Parent gene annotation Tubulin binding cofactor C domain-containing protein
Parent gene strand -
Alternative splicing Zm00001d036798_circ_g.1 Zm00001d036798_circ_g.2
Support reads NA
Tissues leaf, endosperm, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Zm00001d036798_T002:6
Zm00001d036798_T005:5
Zm00001d036798_T004:6
Zm00001d036798_T001:6
Zm00001d036798_T003:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATCCGAATTCGCAAAAAAGGTAGCTGCTTGGCTTAATGGAGTTCCTTCAGAGAGCTGCAAAAA
AAATCCAAGGTGCTCAAAAGTCTCCATTGTCAATACcatataaccaatctttgaattgagcatg
aagggcacatgccaattctttcttccggatatcatcgatctccagctcccggatattcttttga
atatcttc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1054
Transcript exons: 101224063-101224174,101224388-101224474,101224922-101225
125,101225798-101225938,101226099-101226203,101226350-10
1226754
CATATAACCAATCTTTGAATTGAGCATGAAGGGCACATGCCAATTCTTTCTTCCGGATATCATC
GATCTCCAGCTCCCGGATATTCTTTTGAATATCTTCCAGAGAAGCATGCTTTTTCCTTTGGGAC
GCCCAATAAACTTCAGGCAGGGTAAATGGATTGTATTTGGTAGGTCCTTCTACTTCAAACCAAC
TAGGAATCAAAAAGTTCGTAAATAGATCAGGATCTAGACAAGTGGTGGACTCAGCCTGGACATC
AGAAACCCCGGCAGGATGAGATAATGAGTCATGCAGATCAACAACTCCCAACACAAAAGGTTGG
TCCCACTTGTTGACATTAGGATCCACACCAACTTGTGCCAAATGTTCCCCGAGTTGTGGATAAT
AAGTATTAAATGGGGCAACTTGTAATTTATGGTTATCCCCTACAATAAGTGGTTGGTGATTTAC
TCCCAAGTAGAAGATACATTCACGACAATTGGCAATACAAATTCGTTTCGAAGCTGCAATAATT
TGTACACGTTCACAATGCTCCACTTTAACAACCTTACCAATAGCACCAAGAATAATGGTAGTGT
CAGAACATCCATAGACAGTTGCATACTTAAGTGGGGCTAAAATGTAAATTACAGAATCATGGCA
GTTCAAAACCTTTATTGAATGCCCTTTCAGATCCGATGCTTGTTTGACAACTGAAGTTTTCGAG
CAACCCTCCACAAATGATGCATTTCGGTAGTATCCAGGATAGTTTGGTGCAGAACTGCCAGTTG
GTGAACTGCTATGAATTCTTGTATTCGTGACAGCATCAGACATTGTGACATCAGGATCAAATGC
ATTATGTTGGCTGTTTTCTTTTGCCACAGTCTTCTCTGCCATAAATTCTAATGCTGAAGCTATA
TGCTGCAAGACCCAATCATGTACCAAAGCAGCAGGTACAGGAGCAGCGGGCATGTCTGGATCCG
AATTCGCAAAAAAGGTAGCTGCTTGGCTTAATGGAGTTCCTTCAGAGAGCTGCAAAAAAAATCC
AAGGTGCTCAAAAGTCTCCATTGTCAATAC

Genomic sequence CATATAACCAATCTTTGAATTGAGCATGAAGGGCACATGCCAATTCTTTCTTCCGGATATCATC
GATCTCCAGCTCCCGGATATTCTTTTGAATATCTTCCAGAGAAGCATGCTGAAAACGTAAAATA
GGTTAAACTTCAGAAAGATGTTCAAATACTTTATTCTGCATAACATGCTCAAGAATAGGCTTTA
GGCTACTAAAAGATACTGGACAATAAAACAAGACACTAATAAAACTGCTGGCAACAACATTGGG
ATCATTCCATTGATCCAACTACTATTAGAAAACTATATACAAAGGTTTGCTGTCACTCGACATG
TATACCTTTTTCCTTTGGGACGCCCAATAAACTTCAGGCAGGGTAAATGGATTGTATTTGGTAG
GTCCTTCTACTTCAAACCAACTAGGAATCTGCATAGAGAATTAGCTGGCTGCCATTTTTAATAT
TTTGCAAGAAAAAATGCACACTGTAGTCATTTAAAATGCATCAGATGTAACTTTTACAGAACCA
CAACACAATATATTACCACCCACAATATTTTATTGAATCTGGAGAGGCCAAAGCCCCATTACCA
CCCATATTTAGGTGAGAACATTCAGAAACTAAAAATTAATGTCAATTGATTGATCAATTAGTAA
CATAGTATTACAAAAATATGGAATATAGGTTCCTACTCCAGCTGTTATGGACACAATAATACTG
CAAAAAATCGAGTAACCTTATTAATGCAGATGCATCAGACGCAACATGTTGTCAAAGCAAGAGA
TATCTCATCATAAAACTTTTTTAACTGCATTTGAGTTTTTTCAAGTCTAGCATAAGATAGCAAT
AATGAAAGGAATATATAGCTCACGTACCAAAAAGTTCGTAAATAGATCAGGATCTAGACAAGTG
GTGGACTCAGCCTGGACATCAGAAACCCCGGCAGGATGAGATAATGAGTCATGCAGATCAACAA
CTCCCAACACAAAAGGTTGGTCCCACTTGTTGACATTAGGATCCACACCAACTTGTGCCAAATG
TTCCCCGAGTTGTGGATAATAAGTATTAAATGGGGCAACCTGTTAAAATCCAAAATAAAGTACT
CACAAGCTGTTGAAAATTAAAGTACATGAATTGCCAATTTGCCATGTTTTTAAAGCAGAGATTC
TTGAAATCAAAATGAACAAATAAAATCACACTTAAGTTTGTCATGTTTGGCCGCATGTACCAGA
GATGTCTCCGTCATGACAGGCCAAAACCGGAGGCTGAAACAAGCATGTCCAGTTCAAGTGGCTA
GACAGTTCGTTAGGATTAGTTGAGAGTATTTTGGAGTCGTCGTAGCTTAGTCTGTGAGAGTTTG
AGAAGATAGTGGAGAAGGGGGGTGGGAGACTATATATGCAGTTTGTAGGCCCATGAGTTTAGAA
ATCAAGAAGTTAAACCAAATTCCCTTTCACCCCGAGCCTTCAGTTCATCAACACTGGCACCATG
GCACGCAACTTCAAGCACTCGGTTACTCGTCCCCTCCATGGGTAAAACCTAAGTCCACGCTACT
ATCCATCCCCAGGCAATGACGAGGTTCAAGTTCAACATGTTATTTCTGCATATCTGAACCCTGC
TGTTTGTTACCTTCTAACTGTCCACGATATCCTTTATCATTTATAACAAGATGAATATTGATAC
ATTACGGATTACCATATACTGGTACACATGTGACGAGGGGAAAAAAGCACTGATGGAAGAGCAC
AACTCACTTGTAATTTATGGTTATCCCCTACAATAAGTGGTTGGTGATTTACTCCCAAGTAGAA
GATACATTCACGACAATTGGCAATACAAATTCGTTTCGAAGCTGCAATAATTTGTACACGTTCA
CAATGCTCCACTTTAACAACCTGATAACATAGAACATTTTTTGGCTCAACATAAGACAGATACT
TAAATCTGGAAGATGGAAACTATAGAATAGAATTCTTAATGAAAGGTGTGCATTGAAAATATAA
AGTCATCCTGGAATCCCATAGTCTTACATAGTAAAAATTATATGAATCATACCTTACCAATAGC
ACCAAGAATAATGGTAGTGTCAGAACATCCATAGACAGTTGCATACTTAAGTGGGGCTAAAATG
TAAATTACAGAATCATGGCAGTTCAAAACCTACAAAAACATTATATCAGTGTGATTAATCACTG
CCAGTTGCCAGTTTGAAATTCCAGTCTTGAAGATACAATATGGAAATACAAAGGGGCAAGCATC
TTCAGTTTCTGTTGTCCACAAAAAAACAAAAAAAAACACATGCATACCTTTATTGAATGCCCTT
TCAGATCCGATGCTTGTTTGACAACTGAAGTTTTCGAGCAACCCTCCACAAATGATGCATTTCG
GTAGTATCCAGGATAGTTTGGTGCAGAACTGCCAGTTGGTGAACTGCTATGAATTCTTGTATTC
GTGACAGCATCAGACATTGTGACATCAGGATCAAATGCATTATGTTGGCTGTTTTCTTTTGCCA
CAGTCTTCTCTGCCATAAATTCTAATGCTGAAGCTATATGCTGCAAGACCCAATCATGTACCAA
AGCAGCAGGTACAGGAGCAGCGGGCATGTCTGGATCCGAATTCGCAAAAAAGGTAGCTGCTTGG
CTTAATGGAGTTCCTTCAGAGAGCTGCAAAAAAAATCCAAGGTGCTCAAAAGTCTCCATTGTCA
ATAC
Conservation Information
Conserved circRNAs NA
PMCS 0.163772038
Functional Information
Coding potential Y
Potential coding position 101226692-101224082(+)
101226649-101224066(+)
101226747-101226734(-)
101224175-101226734(-)
Potential amino acid sequence MEFLQRAAKKIQGAQKSPLSIPYNQSLN*(+)
MSGSEFAKKVAAWLNGVPSESCKKNPRCSKVSIVNTI*(+)
METFEHLGFFLQLSEGTPLSQAATFFANSDPDMPAAPVPAALVHDWVLQHIASALEFMAEKTVA
KENSQHNAFDPDVTMSDAVTNTRIHSSSPTGSSAPNYPGYYRNASFVEGCSKTSVVKQASDLKG
HSIKVLNCHDSVIYILAPLKYATVYGCSDTTIILGAIGKVVKVEHCERVQIIAASKRICIANCR
ECIFYLGVNHQPLIVGDNHKLQVAPFNTYYPQLGEHLAQVGVDPNVNKWDQPFVLGVVDLHDSL
SHPAGVSDVQAESTTCLDPDLFTNFLIPSWFEVEGPTKYNPFTLPEVYWASQRKKHASLEDIQK
NIRELEIDDIRKKELACALHAQFKDWLYGIDNGDF*(-)
MLLWKIFKRISGSWRSMISGRKNWHVPFMLNSKIGYMVLTMETFEHLGFFLQLSEGTPLSQAAT
FFANSDPDMPAAPVPAALVHDWVLQHIASALEFMAEKTVAKENSQHNAFDPDVTMSDAVTNTRI
HSSSPTGSSAPNYPGYYRNASFVEGCSKTSVVKQASDLKGHSIKVLNCHDSVIYILAPLKYATV
YGCSDTTIILGAIGKVVKVEHCERVQIIAASKRICIANCRECIFYLGVNHQPLIVGDNHKLQVA
PFNTYYPQLGEHLAQVGVDPNVNKWDQPFVLGVVDLHDSLSHPAGVSDVQAESTTCLDPDLFTN
FLIPSWFEVEGPTKYNPFTLPEVYWASQRKKHASLEDIQKNIRELEIDDIRKKELACALHAQFK
DWLYGIDNGDF*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to drought stress