Detail information of Os03g0223000_circ_g.6


General Information
CircRNA Name Os03g0223000_circ_g.6
ID in PlantcircBase osa_circ_018581
Alias NA
Organism Oryza sativa
Position chr3: 6437881-6438160  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method circseq_cup
Parent gene Os03g0223000
Parent gene annotation Similar to atypical receptor-like kinase MARK. (Os03t0223000-01)
;Similar to Atypical receptor-like kinase MARK. (Os03t0223000-02
);Similar to atypical receptor-like kinase MARK. (Os03t0223000-0
3)
Parent gene strand +
Alternative splicing Os03g0223000_circ_g.7
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   CC-AC
Number of exons covered Os03t0223000-01:1
Os03t0223000-03:1
Os03t0223000-02:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGATCGACGAGATCCGCCGCTCCAGCCTCGGCGACCGTCCGGCCACCGACAGCGCCGGCGAGGG
CGAGGAGCCTTCACTATAACCGACCAGCCGACATTGtcgacctgccgcgctgggtgcagtccgt
cgtccgggaggagtggaccgccgaggtgttcgaccaggagctcctcaggtaccagaacgtcgag
gaggagat
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 280
Transcript exons: 6437881-6438160
TCGACCTGCCGCGCTGGGTGCAGTCCGTCGTCCGGGAGGAGTGGACCGCCGAGGTGTTCGACCA
GGAGCTCCTCAGGTACCAGAACGTCGAGGAGGAGATGGTGCAGCTCCTCCAGCTCGCCATCGAC
TGCTCGGCGCAGCACCCCGACAGGCGGCCGTCCATGTCCGAGGTGGCCGCGAGGATCGACGAGA
TCCGCCGCTCCAGCCTCGGCGACCGTCCGGCCACCGACAGCGCCGGCGAGGGCGAGGAGCCTTC
ACTATAACCGACCAGCCGACATTG

Genomic sequence TCGACCTGCCGCGCTGGGTGCAGTCCGTCGTCCGGGAGGAGTGGACCGCCGAGGTGTTCGACCA
GGAGCTCCTCAGGTACCAGAACGTCGAGGAGGAGATGGTGCAGCTCCTCCAGCTCGCCATCGAC
TGCTCGGCGCAGCACCCCGACAGGCGGCCGTCCATGTCCGAGGTGGCCGCGAGGATCGACGAGA
TCCGCCGCTCCAGCCTCGGCGACCGTCCGGCCACCGACAGCGCCGGCGAGGGCGAGGAGCCTTC
ACTATAACCGACCAGCCGACATTG
Conservation Information
Conserved circRNAs osi_circ_014073
PMCS 0.268571726
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2016