Detail information of BGIOSGA031464_circ_ag.2


General Information
CircRNA Name BGIOSGA031464_circ_ag.2
ID in PlantcircBase osi_circ_008665
Alias Chr10:23292397_23297011(MH63RS2), Chr10:23292397_23297011(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 20437969-20442586  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ag-circRNA
Identification method CIRCexplorer2, CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA031464_circ_ag.1 BGIOSGA031463_circ_igg.1 BGIOSGA031463_circ_igg.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCATATGCAATTTCGCATACCAATGTGATTAGTTGCAAAATGCAATTCTAGGCCGTCAATGGAG
CGTATGCAGTCCTTGGACAGGATTCCAGCGTTATTGcatgagtatgttgagaggtaggttcaga
gcctcaaactcggtggcaaatctcctcaccgaatccatggagctgaggtccatctccagcacat
ggataccg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATGAGTATGTTGAGAGGTAGGTTCAGAGCCTCAAACTCGGTGGCAAATCTCCTCACCGAATCC
ATGGAGCTGAGGTCCATCTCCAGCACATGGATACCGGCGCCGGGGATCTCAGCCCGGATCGCCT
CGCTGGCCCTGTGCCCGGCGGCGACGTTGCGCACGGCCATGACGACGCGCACGCCGCGCAGCGC
CATGACGCGCGCCGTCTCCAGCCCGATGCCGCTCGACGCACCTGCAGCTCATCAGCCCACTCTG
AATTTTTCTGGCCAACGTCGAAACCGTGAGCTAAATGGCATGGCAGCAGACCAGCAGCAGCATC
ATATTCGTACCTGTGATCAGGGGCGGAGCTAGTATAGCTAAGGGGGTGCCCAGGAACTGGTTAA
AAAAAAATTACCTATAGTTTATCTATTTTCACCATATATATACCCCGTCAGTTTCACTCATATC
AAGCTAAATTTGATTCAAACCAGAGTAAAGCAAGCGAGTGGAACCTCTTTCATTTTGTTCTAGC
TCCGCCCCTGCCTGTGATAATAGAACTTCGCACCATCTTGCGCGAGTCGTTCAAAAAAAAAATC
ATATCCGTACCTGTGATGACGGCGACCAAGCCCCGAGCGTCGATGCCGGCGGTGACCTCCTCGG
CGGTGGAGGCGCCGGAGAAGCCGGAGGGGCCTTTGCGGTTGAACCAGCACATCGCCGACTCCGT
ACCAAGCTGGCGTACGTCGAGCTCAGGGAATAGTGGCGTACTGGTGTTTGCAAGCTGAGTTCAG
CTTCGGCACCAGATGGCCTGAAATTATATGGTTAGACTCTGACAGTGAGAGAATGTGATGTGGC
CACAGCAGTTTCAGCTTGTTACTCTACCAAAGTACTAAAGATATTGTTTTTATACCATAAATTC
CCAGAAGACTTCAATAAGATAAGAACACCTCACACAGCCGATGAGCAGAGCAGAGAAGTAAAGC
CGAGGTGGGGTGCTGGTTTTCTGTTCAGCTACAGCTCTGTGGGTGGCTGGGTGCAAAAGAATAA
TGCTCTCAGCATGCTACAGACGACAGTATGGAGGAAAAACTGCAGCCGATGGCGATGGAGATGC
TGATATGCATTGACAAACTAGAAACCGCTTCCAAGTTACAACTGTAGCCGATGGCAATGGAGAT
GCTGATATTGATTGTCAAATCACAAACCACTTCCAAGTTCCAGGTGTGCCAATGTCAACCGGTG
GACAAAGTATATCAAATTATCATTTTTTTTCTTCAAAGTCATATAGTAGTAGTATATATCTGGT
GTCCCATCATTTCTTGTGAGTAATCCAATTACTAGAATCCAAATCCAAAACGAAATACTAGTAC
ATTCTAGTATTGAGTAGATATAAGAGCTTACCGTTGACGAAGTGGAATTTCATTTCTGAAGAAA
ACGGGTATACTAACTCAGAAGTATGTACTGGCTTCCAAAAGCATCACCCTTTATAACAATTCTT
CTTCTTCACTCTACATCCAATCATCTATTTGGTGATTTGAGTTGCCTAAACCTTTGAAACAGCA
TTATAAATGACGTACCCATTTGTCTTAGGTCGCAAACTTTTTTTCTTACCAGAAGGGAAGCAAA
GCGCACTGGGGCATTGTATCGAACACCTGGCGGGCACGGACAGACAACACAACGGATCCGGCGG
GTCATACGCTCTGAAGCCGGAGCCCGGCGCAGCGGCGCGCCTCCTCCTCCGTCCGCCCGATCGC
CTCGCCGTGGACGGTGCCGTGGACTTCCAAGTTCCAACGTCTCCTGCAAAGAGCCACCCACCCC
ACCAACAGGTTAACAGATGGTGGTCCTCGACGCGTCGAGGCTGAGTGATAGTACTATTTTCTTC
TCTCTTTTCGCCTGAGGAGTTCGCTGATCCTACGAACCCTCTCTTCCGTCGCGAGCACCCTTCG
TCGTTGCCATGGGCATCGCCGGGAAGGAGAGACCGGAGACGGTTCTGGTTGTGCTGCCGAACGG
AGGAAAACGCCGAGACGTGTGCCTCGCCTTCTTCAAACGTCTCGCCCTCGTCTTTTCACTTATC
CTTATCAATCAAAATTTAAATTTTCGACCTTAAATTAAGAGTTAATTTTAGAGGGTTTTTTTTA
TCATAGTTTATTTTCTAGTCTTTAGATTTAGATCATTTAGAACACATATGTAAAAGTTTTATTT
ATAAATTATTTTTATTTACAAATATGATATTTGACTTATTTCAAACTATGGGGCTGCTCATCTG
GTTGGGTCAAAATCTTGTTTGACCTCGGTATAACAGCCTCGTTGTCGGCCCATGAAGTGACCGG
ACTTCCTCCATCCAACCTAAAATATAAGGTATTTTGATAAGATGAGACATAGTACTATGAATCT
GGACGGTGCTATATTCTAGTATTACGAATTTAAACACTAAGAGTGCGTTCGGTGGTAAGGGATG
GGAACTAATCTCTCCCACATAAAAAAGGAGCGATTCATTAGCGCATGATTAATTAAGTATTAGT
TTTTTTTTGAAAAATGGATCAATGTGATTTTTTTAAACTGTTTTTTTAAACAACTTTCGTATAG
AAATTTTTTTAAAAAAACACACTGCTTAACAGTTTGAATTTCCAAAAAAAACGCACCACTTAAC
AGTTTGAAAAGCGGTCACGCGGGAAAAAAAAGTGGGTTCTCAACTAGTCTTGCCAAACGCAGCC
TAAAGTATGTTCCGTCCAATCAGATTATCAGAATACGTTATATTTTAGAACAGATGGAGTGCGT
GGTGAGGTGGGATGAATCTCCACACTAACTAGGCAATATACTCCCTCCATCACGGATACTCGTC
GGTTTTGACCCAGAGTAAATGATGTATAAGATATTATTGGTAAAATACAGTTTTTATGCGAAGT
TAGGCAACTCAAAGTCAAAACAGACTTCTTTTTTTAATGGAGTATAACAGAGAAGATTCTTGGG
AGGAACTACACTCTCTTTATTTGTAGACTTTCTATGAAAATTTTATGTTCGGCTTACACGAAAT
AAAATGTAGCGCATGCATATATGAATAACTCAAACTACAGTTTGGCAGCCGACACAATGTTGGA
GCTAAATTCCCATAGTTTCTTGGCCAACTCTGCATTTGAAGCCTGTGAGCTTGGGGTCTCTAAA
TTGCAGTTGCTGAAGTACTTCCCACTTATTCCAGTAACTTGAGGATGTAATGCCACATAACATG
TCGTTGCAGCACCCTAAAAAATAATATCACGAGGTTAGAGTCGCCTAGATGTTCCACACTACAA
CATAACAACATATATAAAAGACGAGATTTTTCATTTTTTTAAAAAAAAGTTCACCTGTTCTACA
GTTTTACATACGATTCTTCCAATGGTGTTCACCACAGCTGTAATGGAGAAGAACAATTGAAAAT
GGTATAATGGTATAAAAGGAGATGCATTCACAAATAGCATCATGTGTTTAGGAGATGCAACCTT
TCCACGCCAGATAGCAAGGATCAAAATGTTTGGGAATCATCCCAAATTAATATTTTTAAGAGTA
TGCTTCTTCAAGTACTACTAATTTATTCCAAAAATATCTTCAACAATTTTGCATTGAAAGGTCT
AGGGATTACCATTAGCCATAGTCCAGTTCTTGAACAGGTTGGTTCCAACAAAACCGGGATGGAT
CGCATTTGCTGAAATGTTCACACCATCTCCCTATTCATACTTAACGGTTTCCAACTTATGATTC
ATAGATTTGGCTATAATCATATGCAAACAGAGACAACATACAAAATTTACTCATAGGCATGCTT
AGCAAATAAGAACACTACCTTCAGAATTCGTGCAAGCTCGGTAGAGTGCAAAATGTTGGCAAGC
TTGGACTGGCCGTAAGCAATATAAGTGGAGAATCTGGTAAGATAAATCAAGTGCACAATAAATA
TATTTATCTTTACTAATTGGAGGCCCCTTAATTCCTCATGTTAACATTAGAATGACAAAAGCTA
AAGTTCTTACATTAACCAATAAATAAAAGGAACAGATTAACATAAACCGCTGGAAGAAATATTT
TCTTTTAACTCAAGGATGGCCGAGATGGCCCTCCTGAATGTATTGATTCTTAAATGTAAAAGAA
GAATGATTTTGGTCATCCAATTCTCTAATGGATGACAGGAAATTACCTCCTTGTGTCTGTAATG
TAAAACAGAGTTATATTGTTAAGAATAATGTAAAACAGAGTTATATTGTTAGAATCGACATCAT
ATCTATGCTCCTTGAAATGCAAAAATGGCCTAGCTAGTTAGTCCTAATTTTTAGAGTCTCGGAA
TTTATTAATTACCTCGAAAGATCTTTTACACTATCGAAACATATCCCTTCAGGATAGGTCAAAA
TGTGCCCCGAAGACGACACATTTATGATCCTTCCTTCGACACCAGTTGTCCTACTTGTGCTCTT
CATGTTCTCCAGTAAAAGATTCGTTAGAAGAAAATGGCCTGTCATTCAAGTCATAAAAGCAATC
AATCCACAATTAAGCAATATCGAGATGCACGAGGAATGCCATATGCAATTTCGCATACCAATGT
GATTAGTTGCAAAATGCAATTCTAGGCCGTCAATGGAGCGTATGCAGTCCTTGGACAGGATTCC
AGCGTTATTG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021