Detail information of Zm00001d006797_circ_g.1


General Information
CircRNA Name Zm00001d006797_circ_g.1
ID in PlantcircBase zma_circ_001211
Alias circ524
Organism Zea mays
Position chr2: 216903925-216908667  JBrowse»
Reference genome AGPv4.38
Type   ue-circRNA
Identification method CIRI
Parent gene Zm00001d006797
Parent gene annotation GUP1
Parent gene strand -
Alternative splicing Zm00001d006797_circ_g.2
Support reads 6
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   CT-AA
Number of exons covered Zm00001d006797_T009:2
Zm00001d006797_T012:2
Zm00001d006797_T003:3
Zm00001d006797_T005:3
Zm00001d006797_T013:1
Zm00001d006797_T002:3
Zm00001d006797_T008:5
Zm00001d006797_T010:4
Zm00001d006797_T001:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACAATGAGAATGAATATCCTTCATAAACTCGGTTAAGAATAAGAACAGATAAGTTGAAGCTCCA
AATGAGACTTGTGCAATACTTATAATGAGCAAATAGcctgagcagcaaatgcattgtatccaac
aataggtccagcaatatacactggagcatatgtcaagtagcataaatacataagaaatgtatat
ctgtcaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGAGCAGCAAATGCATTGTATCCAACAATAGGTCCAGCAATATACACTGGAGCATATGTCAA
GTAGCATAAATACATAAGAAATGTATATCTGTCAAGACTGAGCCCTCTTTCCTGCAAGAACAGT
GCTTTATCACCGGAACAAAGAATGAATATAGTTCAGTTCCTAAATAAATTGCTTAAGCTAAATA
AAGTTATAAATAAAAAAAACTCAACAATGATACAATGACATACCATAGTAGAAAAGATTAAAAA
TGCCAAGACCTAATTTACAGACAACCTAAGTCTATATTGAATTCACCTAAAGGTCAACCTGGTG
TCAGCAGAAACTAACCATTCCTTAGTAAGTCTTCTTCCAATATCTTCTCATGAGAGGCCTGATT
CCTTGGAGACAATTTCTTATTTGACACTAGTAAAGTTCATGGTTCCTTTCTTGGCCCTCAAAAT
ATAAATTTTACCTATTTGACATTAGACGTAAATTTGGTTCACTATATGACACTACCGTTAATTC
TGACCTCTAACGGTGTTAACTTTCATAAGAAAAGATGATTTTACATTTTTACCCCTGTTGAAGA
TAGTATATATAACTTGTAGCAAAGTGTAATATATTTCCATAATAACCTGTATTACACCATTTTG
ATGCTACAGAACTAACGGTAAAATTAAGTATTTATATTACAATAGTGTACTATAGGTTATTATG
CCATTATGAAAAGAGTAAAATGCAGTAGCGGTCCTCAAACTTGGCACGATGTGTCACTTAGGTC
ACTGAACTTAAAAAACCAGTAAAACAGGTCCTCTAACTTTGTAGGCCTGTGCAAAACCATCCAA
AACCACTTTTGCTCAAACTGGATGTCGATGTGGCATGTCACATTGAATTCACTTGGGTCTCTGA
ACTTAGCATGTTGTGTCACTTGGATCCCCAAAGTTGACATGTTGTGCCACTTGAGTCCAAGAAC
TTTCATTAGTATGCTCCAACGTTTTTTTCTCGAAAACGCAGGAAAACTGCATTTCATTAAATTA
AGAAGCAAAATGGTAGAGCAAACCAAGTACAAAGGGCTCCTTACGGAGGCCGGAAACAAAGAAA
CCTAAATGGACTCATCTAGAAACCAAAAAAACAAACGACCATAACCACCTCACAGAACACTTAT
GACCAAATACCACGTAGCCCTACAATTCCAGCCATACAACAAAGAGATGCCCATGCCTCATCTT
TGATATCCTGGATGATCTTGGTAATGCTAGGTGGAACTTTTATGCTCCAACGTGGCATGCCATG
TCGGCATTCGGTTTGAGCAAACCCGGTTTTGGACGGTTTTACACAGGCTGACAAAGTTCGAGGA
CTCGTTTTGCTGGTTTTCTAAGTTCGGTGGCCCAAGTGATACAAAATGCCAAGTTCGAGGACCG
CTACTGTATTTTACTCTTATGAAAATATATTACACTTTGCATCAAGTTATATGTACTATCTTCA
ATATGGGTAAACTCGTCTTTTCACATGAAAGTTAACACCACTAGAGATCAAAACTAAGGTAGTG
TTATATAGGGAACCAAATTTACATTCAATGTCAAATAAAGAAGATTTATATTTTGAAGGTTAAG
AAAAGAACCAGGAACTTTACTAGTGTCAAATAAGGAATTGTCTCAATTCCTTGCCCCCATGCAA
ATTCATATGCAAGTCAGTCAGCGTGGGGGCACGAAAAAGACCTCATGCAGTAATCGTTAATGTA
TCAAAATAAGAATGCTAGTTTTGTTCTTGCTTATGCCAAAACTAGTTTTCATGAAACTAAACCA
GACCTTACATATGTCTAAAACCTTAACACATTTAGAAAAATGGATTAATTGTTACAAGAAAATT
GGAAGACTGAAATACCTGCAAAGCAAAGTAGCATGTCTTTCCAGAATAACAAACCTGACATCTT
TGCATATGTTTCTGCACCAAGAGCATCCATGTTAGTATACTACAGCATTGGCCAACGGAGTGCA
TTCGGCATTTATGAAAGCTAGCACATCAATATAAGTAACTATGTCAAAGGTACGGTTAACAACA
AATGAGTTAAATGCATTGTCGACGTCGTTCCCTGAACTTGTCATGGTGTGTCATTTAAATCCAT
GAACTTTGAAAATGCATTTCTAGGTCCTGAGACTTGTGAAATTGTGGTATTTAGGTCCAAAGTG
ACAAAAATGTCCCTGTCGAGGGCTCGAGGCTAACCTGTCATTATGAAATACCCGCAGAAAAACA
CAACGCCAGCAATGCATGGACACTTTTGGTACAAGACATCAGCAATGCATGGACATTTTGGGTA
TTTTGGACCTAATTAGACCTAAATGATACTATTTCACAAGTTTAAGAACCCAGAAATGCATTTT
CAAAGTTCATGGACCTAGATGACACTGTGACAAGTTTAGGGACTGCTAATGCATTTAACTCAAC
AAGATACAGTAGAGTTGTAGTTGTAGCTATTCGTGAGAACTATCAGCAACAGCTATTTATAATA
AAAAAACAATTGCGAACATTGTTTTGAAAACCATATTTCATACAGATGTGATCAGATATCAGAT
GCACTCCACTCCAACAAGCATGTCACTAAACAGACCCACTTTGTGAAACATCAAAGTTCTGATG
CTGCAAAACTAACATGGCACAAGGATACCTTGAAGTCAAAATGAGAAGAATGAATTGTCCAGCA
GTAATCACATCCAAAGCTAATCATCCGTAATACAACTGCAGCAGAAAATTAGAATGTGCACAAA
ACCAATATTGAATCAAGCAATCTAGACAAGCTTGGTTACACATAAACACGCGCAGAGACAAGGA
GTAAAAACAGCACAATACTTGCTCTGATATCAATACAAAGGAACTCTTGTGATAGATGGATCAA
GCCTAATGCAACTTCAAACAATAAACTGCCTCAGTTTTAGACAAATTGCAAGATAGTTATCAAA
ATGAGGTACTCCAGTCCAATGGCATCTGACCTCAGAGCTTAGTAGGGATGAAAACGGTTTCGGA
ATTTTTCGGTATTCCGGAAACCGATTTCGAATTTTTTCGGTCGGATTCCTCGGTAACGGTATTT
TTCGAAAACGGAATCGGTTTTCGGAATTTTCTATCGGAATCGGTATCGGAATCGGCGTGGTGTT
TTACCGACCGTTTCCTTCGGTTACCGGTTTTTGTCGGAAATTACCGGATTTGTGTCTCGGAATT
TTCCGGAATTGTGTCTCGGAATTTTTCGGAATTGTGTCTCGGAATTTTCCAGCATGTGATTTTT
CGCATCGCCTGTACATCTCTAGATAAGGGTTACTTATTTTTGTATTTTTTGGACACCTTTAGAT
TTTTTTTTTTTGGATAGATGGTTTTGGAAGGCAGTTGAGATTAACGATTTGGTCTTTTCCACAC
ACTAGGTTTTAGGGTTTTCCTGTGAGGTTGTGAAAAACTTTTTATGTGAGGAAAAAATATTTCA
TAAGTAAGCATGCCATGTCAGCTAGATCGAGTGGATATTGTGAATTGTGAACTTTGAGTTTATG
AACTTGTGATCTTTATGAACTTGTTATACTGTGAACTTTGTTATATTGTGAACTTGTGGTCTTT
GCACACTTTTTATATTAAAAATTTGTGATCCTTGTGAACTTTTTATATTGTGAACTTGTTGTAT
CATGAATTGTGAACTTGTGTTCTTTGTGATCTTTTGTCAACTTTGTTGTATTATGAAGTTTAAT
ATATTTACCGATTGTATTTTAGATTCCGACCGTTACCGGTGTATTTTCCGCACCAAACTTTCGT
TTCCGATGTTTCCGAAATACCGATATCGTTTCCGTTTCCGGAGTTACCGTTTTCGATTTTGTTT
CCGATAAAAAATATGAAAACGGTAATGGTTTTAGTGTTTACCGACCGTTTTCATCCCTAGAGCT
TAGTAACTAGGTTCCGCCGTTCCGGATCGATGGGAATATGGGATCGAGGAACGGGAACGTGGTA
CACGGTACGCTACTAAAACTAGGTTTTAACACTACGGGAACGAGAATGTTCCCACGTTCCCGGA
ACGAGGAACGTGGTGTCGTGGTCACGTTCCCAGTTCCCGGTTACTAAGCCTCACAGCATCAGCC
AGGATGAAATAGTTGCCAATGACTTGCCAAAAAAAGAAGTATCTCAAGTAGGTCGGTAACCTTC
AGTTTATTACTTCTGGTTTTGAAGTTTTAACTTTTAATACAACCATCAGGTTTTAGTATTCTTA
GAACATGTTCATATCCACAGTTGATAATGTTGACCAACAAACTTACCAAAATATGCATTCAGAA
AGAACTAAACACTAGTCCTTTTTAGTTTTCAAACTTAACATAAAATTCTCTAAAATGTAAGACC
TTTGATAACTTCCCCTGCACCAGATGAGAAACCAATTTGAAGAGCTGCAACGAGCTTCTATACA
GGGCAGCAAACAATAGACGGATGATTTCAATAAAAAACAACAACATAAGGTGAAACATACCAAA
ATTGAAGCATATGTGCCACCTGAATGTACCCCGATAGTTGTCTAGAAAAGCCATATTTTGACTG
TTTTGATAAAAAAGTTAAATCTCATATAAACTAAAGAGAAGACGTCTGAGTAAGAGAAACTAGA
AGATTAAATGCAACTGCATAAAGAATCTAACCCGAACAATGAGAATGAATATCCTTCATAAACT
CGGTTAAGAATAAGAACAGATAAGTTGAAGCTCCAAATGAGACTTGTGCAATACTTATAATGAG
CAAATAG
Conservation Information
Conserved circRNAs NA
PMCS 0.009382248
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b