Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Os05g0447200_circ_g.1 |
| ID in PlantcircBase | osa_circ_028082 |
| Alias | NA |
| Organism | Oryza sativa |
| Position | chr5: 21928176-21931549 JBrowse» |
| Reference genome | IRGSP-1.0.38 |
| Type | ue-circRNA |
| Identification method | CIRCexplorer |
| Parent gene | Os05g0447200 |
| Parent gene annotation |
Similar to auxin transporter-like protein 1. (Os05t0447200-01);S imilar to AUX1-like protein. (Os05t0447200-02) |
| Parent gene strand | - |
| Alternative splicing | Os05g0447250_circ_g.1 Os05g0447200_circ_g.2 |
| Support reads | 1 |
| Tissues | root |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Os05t0447200-02:6 Os05t0447200-01:5 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.138051153 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
21931401-21928201(+) 21930470-21931400(-) 21931511-21930705(-) |
| Potential amino acid sequence |
MLNLPSCSTPMAARTSASSFPASATMASSAWSPAGTILLSSPVFPSPAARQSGGGGAVREDVGE GGDDVDGEADEERADGGVDGAEEGEDDGEEPDGHDDGEAGERAGEDAAGAVHADRLLPHEVERG AREPERDELVDQHQDHRRVAPPGPRQQREGVRVRQQRVAERPVHGRRRRQRQREHVQRRHQVDV LELLRLPHRVHDLYSDGVSAESVEDVGGASEVEHHLARARVRHAVDLAVDGGGDGEVPGGVGGH AEAKEGPDAVVVEGGDEHRGGAARPEYVRPCPLVQPVVDVVYVTCTGDQLDDGAEEQEGAVEGE AGRLPVRAQEPIKNFEPLDDVVLEADAFLLLAGAVLDVEDADEVGGPAAHEAVEHLQQQAREHP ELREGVRQRQEHLRHLVGGAAEPGVPDGAAVPQEARHAELAVLLDAHGRAHLRLLLPGVRHDGL LRLVAGRHHPPVLPGLPVSSRAPIWRRRSGT*(+) MDVHIRGVLLHHGVHPLLPQLPHLVLPWPRHDHLHRLVPRHRRRRPRPGRRRDALGPEQDGALL HWRHQHPLHFRRTRRHCRDHARDVEAAEVQVHLPGGDAVRVHADAAVGVGHVLGVRRRAADALE RLLAAAAVRVARRGGDPDADPPVHHVRVRVHPALLRVGEGDRHARHPQRPHPRARPPPHRRAHL VPRHHLPLLRPHQLRRRRAPRQLHRLHHPLPLPHPHVPLRLRQIGARLETGRPGRTGGWCRPAT RRRRPSWRTPGRRRRRCARPWASSRTASSA*(-) MVPAGDQAEEAIVADAGKEEAEVRAAMGVEQDGKFSMTSLLWHGGSVWDAWFSCASNQVAQVLL TLPYSFSQLGMLSGLLLQVFYGLMGSWTAYLISVLYVEYRARKEKEGVSFKNHVIQWFEVLDGL LGPYWKAAGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCSTTVFIPSFHNY RIWSFLGLGMTTYTAWYLAIAAAVHGQVDGVTHSGPSKMVLYFTGATNILYTFGGHAVTVEIMH AMWKPQKFKYIYLVATLYVFTLTLPSASAMYWAFGDALLTHSNAFSLLPRSGWRDAAVILMLIH QFITFGFACTPLYFVWEKAIGMHGTRSVLTRALARLPIVVPIWFLAIIFPFFGPINSAVGALLV SFTVYIIPSLSHILTYRSASARLARGWRREDRGGQEDGAGRRPGGGGHRGGRREGGGGGARGHG RRAGRQVQHDEPPVARRLRLGRLVQLRLQPGGAGAPDAAVLLLAARDALGPAAAGVLRPHGQLD RLPHQRPLRRVPRPQGEGRRQLQEPRHPVVRSS*(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Chu et al., 2017 |