Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os05g0447200_circ_g.1 |
ID in PlantcircBase | osa_circ_028082 |
Alias | NA |
Organism | Oryza sativa |
Position | chr5: 21928176-21931549 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | ue-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os05g0447200 |
Parent gene annotation |
Similar to auxin transporter-like protein 1. (Os05t0447200-01);S imilar to AUX1-like protein. (Os05t0447200-02) |
Parent gene strand | - |
Alternative splicing | Os05g0447250_circ_g.1 Os05g0447200_circ_g.2 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os05t0447200-02:6 Os05t0447200-01:5 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.138051153 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
21931401-21928201(+) 21930470-21931400(-) 21931511-21930705(-) |
Potential amino acid sequence |
MLNLPSCSTPMAARTSASSFPASATMASSAWSPAGTILLSSPVFPSPAARQSGGGGAVREDVGE GGDDVDGEADEERADGGVDGAEEGEDDGEEPDGHDDGEAGERAGEDAAGAVHADRLLPHEVERG AREPERDELVDQHQDHRRVAPPGPRQQREGVRVRQQRVAERPVHGRRRRQRQREHVQRRHQVDV LELLRLPHRVHDLYSDGVSAESVEDVGGASEVEHHLARARVRHAVDLAVDGGGDGEVPGGVGGH AEAKEGPDAVVVEGGDEHRGGAARPEYVRPCPLVQPVVDVVYVTCTGDQLDDGAEEQEGAVEGE AGRLPVRAQEPIKNFEPLDDVVLEADAFLLLAGAVLDVEDADEVGGPAAHEAVEHLQQQAREHP ELREGVRQRQEHLRHLVGGAAEPGVPDGAAVPQEARHAELAVLLDAHGRAHLRLLLPGVRHDGL LRLVAGRHHPPVLPGLPVSSRAPIWRRRSGT*(+) MDVHIRGVLLHHGVHPLLPQLPHLVLPWPRHDHLHRLVPRHRRRRPRPGRRRDALGPEQDGALL HWRHQHPLHFRRTRRHCRDHARDVEAAEVQVHLPGGDAVRVHADAAVGVGHVLGVRRRAADALE RLLAAAAVRVARRGGDPDADPPVHHVRVRVHPALLRVGEGDRHARHPQRPHPRARPPPHRRAHL VPRHHLPLLRPHQLRRRRAPRQLHRLHHPLPLPHPHVPLRLRQIGARLETGRPGRTGGWCRPAT RRRRPSWRTPGRRRRRCARPWASSRTASSA*(-) MVPAGDQAEEAIVADAGKEEAEVRAAMGVEQDGKFSMTSLLWHGGSVWDAWFSCASNQVAQVLL TLPYSFSQLGMLSGLLLQVFYGLMGSWTAYLISVLYVEYRARKEKEGVSFKNHVIQWFEVLDGL LGPYWKAAGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCSTTVFIPSFHNY RIWSFLGLGMTTYTAWYLAIAAAVHGQVDGVTHSGPSKMVLYFTGATNILYTFGGHAVTVEIMH AMWKPQKFKYIYLVATLYVFTLTLPSASAMYWAFGDALLTHSNAFSLLPRSGWRDAAVILMLIH QFITFGFACTPLYFVWEKAIGMHGTRSVLTRALARLPIVVPIWFLAIIFPFFGPINSAVGALLV SFTVYIIPSLSHILTYRSASARLARGWRREDRGGQEDGAGRRPGGGGHRGGRREGGGGGARGHG RRAGRQVQHDEPPVARRLRLGRLVQLRLQPGGAGAPDAAVLLLAARDALGPAAAGVLRPHGQLD RLPHQRPLRRVPRPQGEGRRQLQEPRHPVVRSS*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |