Detail information of Os05g0447200_circ_g.1


General Information
CircRNA Name Os05g0447200_circ_g.1
ID in PlantcircBase osa_circ_028082
Alias NA
Organism Oryza sativa
Position chr5: 21928176-21931549  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os05g0447200
Parent gene annotation Similar to auxin transporter-like protein 1. (Os05t0447200-01);S
imilar to AUX1-like protein. (Os05t0447200-02)
Parent gene strand -
Alternative splicing Os05g0447250_circ_g.1 Os05g0447200_circ_g.2
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os05t0447200-02:6
Os05t0447200-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTCCTCCTTCCCGGCGTCCGCCACGATGGCCTCCTCCGCCTGGTCGCCGGCCGGCACCATCCTC
CTGTCCTCCCCGGTCTTCCCGTCTCCAGCCGCGCGCcaatctggcggaggcggagcggtacgtg
aggatgtgggagagggaggggatgatgtagacggtgaagctgacgaggagcgcgccgacggcgg
agttgatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAATCTGGCGGAGGCGGAGCGGTACGTGAGGATGTGGGAGAGGGAGGGGATGATGTAGACGGTG
AAGCTGACGAGGAGCGCGCCGACGGCGGAGTTGATGGGGCCGAAGAAGGGGAAGATGATGGCGA
GGAACCAGATGGGCACGACGATGGGGAGGCGGGCGAGCGCGCGGGTGAGGACGCTGCGGGTGCC
GTGCATGCCGATCGCCTTCTCCCACACGAAGTAGAGCGGGGTGCACGCGAACCCGAACGTGATG
AACTGGTGGATCAGCATCAGGATCACCGCCGCGTCGCGCCACCCGGACCGCGGCAGCAGCGAGA
AGGCGTTCGAGTGCGTCAGCAGCGCGTCGCCGAACGCCCAGTACATGGCCGACGCCGACGGCAG
CGTCAGCGTGAACACGTACAGCGTCGCCACCAGGTAGATGTACTTGAACTTCTGCGGCTTCCAC
ATCGCGTGCATGATCTCTCTGCACGCGTAAAAAGTTAATTAAACTTCGTCAACTGTTCAGAACT
TCAGGCACGATTGTTCACTGTCAGCTTCGTTCATCGTGAACCGATCAACAGCACAATCTCTAAT
TCAGCATGCATGTACAGATTATTTGATTATGCAAAATAAGAAATTGTTCATCTTATCTTAAATA
ATAATAATATCAGTACTAGTAACATATATGAAGCTATCAGAATTAGCCCCGCTTGGAACAAAAC
GTACTAAACGGACATTTTTCATACACATGCCAAGTGATATATAAGAACTTTACTTTAAGTTGAT
TGAATGATAAGAGATCAAGCAGGGGGGCAAGGTAGTGCTTATCCTAGTCAGGATATTTATAAAG
ATTGGGACATGAGGAATCTCCCATTATCCCCAAACTTTCACTACATCATTCGGCTGCACAGACG
CGGACACACATCTGGTGATGGTAAGTAAGCAGAGGGGGACCGACAAATACGACCAAATGAAGCT
ACTTGCCGATTACAAGCACCTAACACTCTCAGGTAATGGCAATTACTGTCATCACTCATCACTC
AAAAAGCCCTGAATTGCTTTGGGCAAGAAACTGTGATCGATCGAGAAGGGTAATGTCAAACTGA
CACTTGGGAGTAGGGAAGGAATTCTCAAAGTAGTCTTTCACTGCACTAATCAAAGGTTATCACG
GAAAGATAAAATGGAATCGTGAACCATAACCGATCAGTTAATGAATTGTCACGATCCGATATAT
GTCCTACCAGGCTATCACTGAAGTTGGGCGGGATTGGTTTATTCGATGTTAACTCCGCACTAGC
TGGACTGAAACCAATCCATATCATCTACCCTTTGGAAAGAACATTTTTACCACTACAAAAAAAG
TAGCTGAATTTTAAAGACAAAGGACTCAATATTTAATACCAGGGCGTCTGAACATCTCACTGGT
TCTAATTATTCCTAATAATCGCGATGCAAAGATCATCATAGCAGGTATCTTAGATTAAGCACAA
GAAATGGACAACGGGAATAAAGGAATGTTCACTAGGAGTATTGAAATGCTTGGTGGTCATCATA
GGAACTTGAGCAGAGGACTGTAGGGTGATCGCCAACCTTAGTGGCTATATGCTCCATTTCTTTG
TAACCAATGGCTAGAAGATAACCCTTCTGGTTTCCGTAAATTAAACAAGTTTGCCAAGGAGGGA
GAGACTAAAGATAAAACAGAAACCAGACTAAATCTAGGGTAGGTAACAACGAACATCATTGTTT
CATAGATGGCTCTCCGGAATTCTGGCTTGGACACTGGACCCAGTTGTCGATAACCATTCATGAC
AAAATTAGCAGAGGCATTGCATGGTTTATGCGTCACAATTTACAGTAGCATAGGGTTCTTTTAG
TGCACTTACACAGTGACGGCGTGTCCGCCGAAAGTGTAGAGGATGTTGGTGGCGCCAGTGAAGT
AGAGCACCATCTTGCTCGGGCCCGAGTGCGTCACGCCGTCGACCTGCGACATCGAGTCGAATTC
GATCAGCGGCCACGCCGAATCATACACATCGTTATTAGCCCCCCATCGAATCGAATCATACATA
ATCATTGCAACCATGCTTATAAACAGTGTGGTCAAGCATGTGCCGGCTGATGATTTATTGATTT
ATGGCCGACGACGGCGGGCGATGATCGAGGACTCACCTGGCCGTGGACGGCGGCGGCGATGGCG
AGGTACCAGGCGGTGTAGGTGGTCATGCCGAGGCCAAGGAAGGACCAGATGCGGTAGTTGTGGA
AGGAGGGGATGAACACCGTGGTGGAGCAGCACGCCCCGAATATGTACGTCCATGTCCTCTTGTC
CAGCCGGTCGTTGATGTAGTATATGTTACTGCAATGCATTACAATTTCAGTGACATCTCAATGA
ACAAAGATTACAAAAAAAAAAAGAAGAGTATGTATGTTTGTCTCAAGAACTCGGCGAGTCAACC
TTGCACAGGCGATCAGCTGGATGACGGAGCCGAAGAGCAGGAAGGTGCAGTTGAAGGCGAGGCC
GGCCGCCTTCCAGTACGGGCCCAAGAGCCCATCAAGAACTTCGAACCACTGGTCAGTGGCATAA
GAGAACACAAAAATAGTAAATTTTTAGATAATCCATATTAAGTTTAGTCTAATCCATATGCCAG
TTGATCTGATGCGTGCACTAGGCTGGCTGGAGGCAGATATGCATGCTGATCGCGTTGCAGATAA
GGAACCTGCAGGAGGCGAGAGCATGCAAAAGCGGCTTTCCGTTGGACAAGCAACGCTCGCTCGC
ACGCAGGCGCTGCTCGAAATACCGGCATGAGATCGATCACGAGGGATCGAATTCCGTCGGGGAA
AATAATTAAGCAGTAGTGTGTGCAGGAAAACCCGGAAACTGACGAAACTGAAACTGACGCGAAG
ATGTGCAAGGAGAGGAGCTAGCCCTGCCGACCTGGATGACGTGGTTCTTGAAGCTGACGCCTTC
CTTCTCCTTGCGGGCGCGGTACTCGACGTAGAGGACGCTGATGAGGTAGGCGGTCCAGCTGCCC
ATGAGGCCGTAGAACACCTGCAGCAGCAGGCCCGAGAGCATCCCGAGCTGCGAGAAGGAGTACG
GCAGCGTCAGGAGCACCTGCGCCACCTGCAAAATTCCAAACGAAATGTGAGCGAGAGGCATGAC
GAGGTCGTTCGTGGTTGGTCGTACCTGGTTGGAGGCGCAGCTGAACCAGGCGTCCCAGACGGAG
CCGCCGTGCCACAGGAGGCTCGTCATGCTGAACTTGCCGTCCTGCTCGACGCCCATGGCCGCGC
GCACCTCCGCCTCCTCCTTCCCGGCGTCCGCCACGATGGCCTCCTCCGCCTGGTCGCCGGCCGG
CACCATCCTCCTGTCCTCCCCGGTCTTCCCGTCTCCAGCCGCGCGC
Conservation Information
Conserved circRNAs NA
PMCS 0.138051153
Functional Information
Coding potential Y
Potential coding position 21931401-21928201(+)
21930470-21931400(-)
21931511-21930705(-)
Potential amino acid sequence MLNLPSCSTPMAARTSASSFPASATMASSAWSPAGTILLSSPVFPSPAARQSGGGGAVREDVGE
GGDDVDGEADEERADGGVDGAEEGEDDGEEPDGHDDGEAGERAGEDAAGAVHADRLLPHEVERG
AREPERDELVDQHQDHRRVAPPGPRQQREGVRVRQQRVAERPVHGRRRRQRQREHVQRRHQVDV
LELLRLPHRVHDLYSDGVSAESVEDVGGASEVEHHLARARVRHAVDLAVDGGGDGEVPGGVGGH
AEAKEGPDAVVVEGGDEHRGGAARPEYVRPCPLVQPVVDVVYVTCTGDQLDDGAEEQEGAVEGE
AGRLPVRAQEPIKNFEPLDDVVLEADAFLLLAGAVLDVEDADEVGGPAAHEAVEHLQQQAREHP
ELREGVRQRQEHLRHLVGGAAEPGVPDGAAVPQEARHAELAVLLDAHGRAHLRLLLPGVRHDGL
LRLVAGRHHPPVLPGLPVSSRAPIWRRRSGT*(+)
MDVHIRGVLLHHGVHPLLPQLPHLVLPWPRHDHLHRLVPRHRRRRPRPGRRRDALGPEQDGALL
HWRHQHPLHFRRTRRHCRDHARDVEAAEVQVHLPGGDAVRVHADAAVGVGHVLGVRRRAADALE
RLLAAAAVRVARRGGDPDADPPVHHVRVRVHPALLRVGEGDRHARHPQRPHPRARPPPHRRAHL
VPRHHLPLLRPHQLRRRRAPRQLHRLHHPLPLPHPHVPLRLRQIGARLETGRPGRTGGWCRPAT
RRRRPSWRTPGRRRRRCARPWASSRTASSA*(-)
MVPAGDQAEEAIVADAGKEEAEVRAAMGVEQDGKFSMTSLLWHGGSVWDAWFSCASNQVAQVLL
TLPYSFSQLGMLSGLLLQVFYGLMGSWTAYLISVLYVEYRARKEKEGVSFKNHVIQWFEVLDGL
LGPYWKAAGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCSTTVFIPSFHNY
RIWSFLGLGMTTYTAWYLAIAAAVHGQVDGVTHSGPSKMVLYFTGATNILYTFGGHAVTVEIMH
AMWKPQKFKYIYLVATLYVFTLTLPSASAMYWAFGDALLTHSNAFSLLPRSGWRDAAVILMLIH
QFITFGFACTPLYFVWEKAIGMHGTRSVLTRALARLPIVVPIWFLAIIFPFFGPINSAVGALLV
SFTVYIIPSLSHILTYRSASARLARGWRREDRGGQEDGAGRRPGGGGHRGGRREGGGGGARGHG
RRAGRQVQHDEPPVARRLRLGRLVQLRLQPGGAGAPDAAVLLLAARDALGPAAAGVLRPHGQLD
RLPHQRPLRRVPRPQGEGRRQLQEPRHPVVRSS*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017