Detail information of BGIOSGA016129_circ_g.1


General Information
CircRNA Name BGIOSGA016129_circ_g.1
ID in PlantcircBase osi_circ_014228
Alias Chr04:14535978_14536980(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 12718586-12719588  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA016129
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   Yes-No
Splicing signals   TA-AG
Number of exons covered BGIOSGA016129-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGTATTCCCTATGTCGGAACGGAAGCATGGGTTAGATCCATGGGATACCGAGTAATTGATCAT
TGGCGACCATGGTACTTTGGAGGGCAAGTCGCTGGGagcgacgaacttgctaatgcatggctgg
atgatgaagatgtaagagctgccattcacgcggaaccggtatgatagacgaggaaccaaaggtt
tcattttg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGCGACGAACTTGCTAATGCATGGCTGGATGATGAAGATGTAAGAGCTGCCATTCACGCGGAAC
CGGTATGATAGACGAGGAACCAAAGGTTTCATTTTGAATTTATCTTAAAATTTACACCTCACTT
TCTTCTCTTTGTGGGGAACTACCTTGTTAAAATGGCACATCAGAAAAGCTTAATTGGGTCATGG
GAACTGTATACTGCAAGAATAGAGTACTACCATGATACTGGAGACAGCATGGTGAAGTACCACA
AGAAGTTCACAGCCATGGGATATCGCGCACTTATTTACAGGTATGCAACAGACCATTAAGATTG
TAATTTGAAAATTGAGTGATTTAAAGTGCTAAATTCCTATAAAAAAAGCTACACATTAAATTAA
ATTAAATTCCTATTAATAACCTTGGTGCAGAATGCCAGAATTTTTAGCTACAAATAACAAATAG
TACTACAATTATTGCTCATTTGGATTGAAAATAATTGGAGTACCAAGTTGGGTTGTTTGGAATC
CAACTTATATGGGTTAGGGATTATCAACGGTTTCTGAACCTTGCTTCAGCCTAAGAGGCCCAGG
GTTTCCTAAACCGCTCGGGCCGGGGTTACCGCGCTCCGACGGTAAGTAAGGTTACCGCGCGGTA
ACCGTGAAAAACCGTACAAAACCGTGCAAAATTTATCAAAAATTCAAATTATTTTTTAAATTTA
TTTGAATTTAAGGAGGTTACCGCGGTATTTATATTACCGTACCCCGCGGTAAGCCCAATAACCG
CGGTAACCGCGCGGTTACCGTCGGTTTGGGAAACCCTGAAGAGGCCTAAAATTCAAATTTGTGC
TTGTCTTTGAAAAAAATAAAATGAGAACCAACTACTGATCATTCTGTTTTTTGTAGTGGAGATC
ATGATCTCTGTATTCCCTATGTCGGAACGGAAGCATGGGTTAGATCCATGGGATACCGAGTAAT
TGATCATTGGCGACCATGGTACTTTGGAGGGCAAGTCGCTGGG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021