Detail information of Os08g0123300_circ_g.2


General Information
CircRNA Name Os08g0123300_circ_g.2
ID in PlantcircBase osa_circ_035686
Alias NA
Organism Oryza sativa
Position chr8: 1285042-1285357  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os08g0123300
Parent gene annotation Conserved hypothetical protein. (Os08t0123300-01)
Parent gene strand -
Alternative splicing Os08g0123300_circ_g.1 Os08g0123300_circ_g.3
Support reads 4
Tissues root
Exon boundary   No-No
Splicing signals   CA-AT
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAATAAAATAGTCTATTTAAAAAAAATACAAGACCACTAAATAAACATAACAACCAATCTATGC
ACAAAATGCCAAACTCAAAATACATAATTGTCTCACtacatagtggtacagttcacctgtccaa
cataacgaaatcacaaaaggaaaaccatttgtaatttggtaaatttttcagaagcacaattaca
aacatgca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 316
Transcript exons: 1285042-1285357
TACATAGTGGTACAGTTCACCTGTCCAACATAACGAAATCACAAAAGGAAAACCATTTGTAATT
TGGTAAATTTTTCAGAAGCACAATTACAAACATGCAACCATAGAAGTTTCACTTTCTAAACAGA
AAGGTCTAGGAAACAATAAACATTCCAAATGACTCAATGAGTACATATATTCAGAGTCATGTGT
AAACACTCATTTGGCTTCATAAAGGAATAAAATAGTCTATTTAAAAAAAATACAAGACCACTAA
ATAAACATAACAACCAATCTATGCACAAAATGCCAAACTCAAAATACATAATTGTCTCAC

Genomic sequence TACATAGTGGTACAGTTCACCTGTCCAACATAACGAAATCACAAAAGGAAAACCATTTGTAATT
TGGTAAATTTTTCAGAAGCACAATTACAAACATGCAACCATAGAAGTTTCACTTTCTAAACAGA
AAGGTCTAGGAAACAATAAACATTCCAAATGACTCAATGAGTACATATATTCAGAGTCATGTGT
AAACACTCATTTGGCTTCATAAAGGAATAAAATAGTCTATTTAAAAAAAATACAAGACCACTAA
ATAAACATAACAACCAATCTATGCACAAAATGCCAAACTCAAAATACATAATTGTCTCAC
Conservation Information
Conserved circRNAs NA
PMCS 0.34984397
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017