Detail information of Zm00001d013267_circ_g.3


General Information
CircRNA Name Zm00001d013267_circ_g.3
ID in PlantcircBase zma_circ_001882
Alias circ867
Organism Zea mays
Position chr5: 7502574-7503133  JBrowse»
Reference genome AGPv4.38
Type   ui-circRNA
Identification method CIRI
Parent gene Zm00001d013267
Parent gene annotation Serine/threonine-protein kinase TOUSLED
Parent gene strand +
Alternative splicing NA
Support reads 3
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered Zm00001d013267_T030:2
Zm00001d013267_T021:2
Zm00001d013267_T041:2
Zm00001d013267_T003:1
Zm00001d013267_T025:1
Zm00001d013267_T018:2
Zm00001d013267_T046:2
Zm00001d013267_T042:2
Zm00001d013267_T019:2
Zm00001d013267_T022:2
Zm00001d013267_T044:2
Zm00001d013267_T006:2
Zm00001d013267_T040:1
Zm00001d013267_T011:2
Zm00001d013267_T016:2
Zm00001d013267_T027:2
Zm00001d013267_T048:2
Zm00001d013267_T013:2
Zm00001d013267_T037:2
Zm00001d013267_T005:2
Zm00001d013267_T020:2
Zm00001d013267_T002:2
Zm00001d013267_T004:2
Zm00001d013267_T031:2
Zm00001d013267_T001:2
Zm00001d013267_T038:2
Zm00001d013267_T026:2
Zm00001d013267_T029:2
Zm00001d013267_T034:2
Zm00001d013267_T028:2
Zm00001d013267_T045:2
Zm00001d013267_T043:2
Zm00001d013267_T009:2
Zm00001d013267_T023:2
Zm00001d013267_T047:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCATGATCAGACTCAGGAGAGAATACTTCGGGAAGATACAATTATCAATGCACGAAGAGTGGAG
TTCCCCTCAAAGCCAGCTGTATCGAATGAGGCGAAGggtatcttcctccagaatgctttgacct
tagcaaaacaccatttatttcatctaaggtaattatatctggcaactgttctacctgttaatgc
gctaactg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTATCTTCCTCCAGAATGCTTTGACCTTAGCAAAACACCATTTATTTCATCTAAGGTAATTAT
ATCTGGCAACTGTTCTACCTGTTAATGCGCTAACTGGTGAAAGTATATTATGGTTCTTGTTCTA
CTCATCCAGTAGCATAATATATTCAGGTGTCAAAGGTAATAGGTCTCCTCACTTTAAAAAGTGG
TTTTGGAATGTTTCAATTGGGAGGAGGTATCATGTGATGGTTTGGCTGTATGCAACTTTTACAT
AAAAAACACATATATCATCTCTTGCTGACCTATAGGCCTGGGTTCATTTATGTGCCTCCTGAAC
TCAATCCACTTTCCACAATAATAATTTTTGAAATGTGAACTTCATCCTTATTAGCAATGGTCAT
TCGTTTTCATGCAGGTGGATGTTTGGTCAGCTGGTGTAATGTTTTACCAAATGCTTTATGGAAG
GCGTCCTTTTGGTCATGATCAGACTCAGGAGAGAATACTTCGGGAAGATACAATTATCAATGCA
CGAAGAGTGGAGTTCCCCTCAAAGCCAGCTGTATCGAATGAGGCGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.038402976
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b