Detail information of Os04g0598200_circ_g.1


General Information
CircRNA Name Os04g0598200_circ_g.1
ID in PlantcircBase osa_circ_025050
Alias Os_ciR9532
Organism Oryza sativa
Position chr4: 30180719-30180893  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os04g0598200
Parent gene annotation Similar to 60S ribosomal protein L12. (Os04t0598200-00)
Parent gene strand +
Alternative splicing NA
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os04t0598200-00:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAGATCCTTGGGACCTGCGTCAGCGTTGGGTGCACCGTCGACGGCAAGGACCCCAAGGATCTGC
AGCAGGAGATCTCCGATGGCGAGtggtaacatcagcctcgacgacgtcatcgagatcgccagga
tcatgaggaacaggtccatggccaaggagatggccgggaccgtcaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGGTAACATCAGCCTCGACGACGTCATCGAGATCGCCAGGATCATGAGGAACAGGTCCATGGCC
AAGGAGATGGCCGGGACCGTCAAGGAGATCCTTGGGACCTGCGTCAGCGTTGGGTGCACCGTCG
ACGGCAAGGACCCCAAGGATCTGCAGCAGGAGATCTCCGATGGCGAG
Conservation Information
Conserved circRNAs osi_circ_014733
PMCS 0.440112429
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015