Detail information of Os01g0865600_circ_g.6


General Information
CircRNA Name Os01g0865600_circ_g.6
ID in PlantcircBase osa_circ_004948
Alias Os_ciR6288
Organism Oryza sativa
Position chr1: 37462587-37463325  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method find_circ
Parent gene Os01g0865600
Parent gene annotation Basic helix-loop-helix dimerisation region bHLH domain containin
g protein. (Os01t0865600-01);Basic helix-loop-helix dimerisation
region bHLH domain containing protein. (Os01t0865600-02)
Parent gene strand +
Alternative splicing Os01g0865600_circ_g.1 Os01g0865600_circ_g.2 Os01g0865600_circ_g.3 Os01g0865600_circ_g.4 Os01g0865600_circ_g.5
Support reads 2
Tissues root
Exon boundary   Yes-No
Splicing signals   GT-AG
Number of exons covered Os01t0865600-02:3
Os01t0865600-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGCGCGATAGTTTCTTTCCATCGTCTATTCCAGCCTCTGGTTTCTCCAACTGCTTGTGACACGA
TGTACCATACCTCAGCAAGTGGAGCGCTGTGAGTGGattgttagtcatgaagaaggtttgctct
tgaaagataactttgaaggtggtgcaacctgggcctttgaagttggtacgcgatctatgacatg
tccaatca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATTGTTAGTCATGAAGAAGGTTTGCTCTTGAAAGATAACTTTGAAGGTGGTGCAACCTGGGCCT
TTGAAGTTGGTACGCGATCTATGACATGTCCAATCATAGTAGAGGATCTCAATCCACCCCGTCA
AATGCTTGTGGAGGTATTTGCTACTTCTCTGTTTTCTTAGTTCTTGTAAATGCTACTGCACGGT
AATTCTGAGTGATGATTCGAACATGTTGTAATTGTTCAGATGCTTTGTAAAGAGAGAGGAATCT
TCTTGGAAATAGCTGATCAAATTAGAGGTTTAGGGTTGACTATCTTGAAAGGTGTGATGGAAGT
TCGTAAAGATAAGATTTGGGCTCGCTTTGCTGTTGAGGTATTAAATCTTTCCTCGTCTCTCTTC
AACTTAGTACCAGTTCTTATGACTATCAATTTTTCTGCCAAAACACCAAGCAAAATCACATTCT
AGCGTGATTTGATTATGAAGCTACAAGTGGTGTGGACTGAGTAGTATATCAAAGTTTAATTAAA
ATATTGAAATTTCTGCAGGCAAACAAGGATGTAACTCGGATGGAAATATTTCTTTCTCTTGTCC
ATCTTCTGGAACCTAGCACTGGGAGCTCTATTTTGTCAGCAGGTGTTGAGAACACTAGCCTGCC
GCGCGATAGTTTCTTTCCATCGTCTATTCCAGCCTCTGGTTTCTCCAACTGCTTGTGACACGAT
GTACCATACCTCAGCAAGTGGAGCGCTGTGAGTGG
Conservation Information
Conserved circRNAs osi_circ_010961
PMCS 0.157875812
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015