Detail information of BGIOSGA011327_circ_g.1


General Information
CircRNA Name BGIOSGA011327_circ_g.1
ID in PlantcircBase osi_circ_013967
Alias Chr03:4280157_4281594(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr3: 4757125-4758562  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA011327
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA011327_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-GA
Number of exons covered BGIOSGA011327-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGCATCGCCTGCATTGTTTTCCTTAATGAAGCTGATTGTTGAATTGATAATCGGGAGGCAGAC
AATTCCCAGGAAATCCTCCCAATCAGTACCTTGGCTcctattatgatccttgtgtacagaattg
acggaaatccaccacctccatcatatacagctcccccctccaccaaaccgtccaaacagcccag
gtcaagac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTATTATGATCCTTGTGTACAGAATTGACGGAAATCCACCACCTCCATCATATACAGCTCCCC
CCTCCACCAAACCGTCCAAACAGCCCAGGTCAAGACAATGGTGGTTCATGTTTTGGTGGAAGCT
CTGGGGCAGTCCTTGCATTCTTTGTGATAAGGAGAAGAAAACGCAAAGCTGCAATGGAAGAACA
CTTTGAACAGCAGCAACCATTCACCTCATTCCCTTCAAACGAAGTTAAACGTATGCTTACCTGA
TATCAGCCTTGCTGATCATCATACTTTGTTTTGTTATCTATTTTATGCAATCATCTGAAAATTT
GCTTCTGGTAATGTGCAGACATGAAGCCTATTGAGGAGTTACAAATAGAACAGCATGGTGACCA
ATGCAAGGTAGGTTACGATGACAACTCCAGCTGCAAGTATCTGGGCTTGGTGATGGCTTCACGC
GATCCTTTGATATTGTCATGATAGTTCCTGATCAAAGCAGATGCCGACCTATATATTTATGCTT
CAGAAACAGTAAAATTCAGAGAGAAATGATCGTCACCATCATTTAGTATGGCTATGATCAGAAC
CATAAACAGAGGGAAGTCGTAATCCCATCTCGGTATGACCGGTGCTGGATTGGGAACATGATTA
TAACCTCAACAATCACACCAATGGCGATTGAGTAGATACAGAAGTTGCCTATGGAGGTAAGAAT
CAGAAAATTCAGTGGTTAGAAACAGCTTACAGCACATCCACTTGTGAGGTTCTTATAATCTTAT
TACAGTCTAAAGATTGATGAATCACCTTCTGAAAATGCCCAACAACCTCAGTGGAGTCCACTAG
ATGAGCTGCCTTGCCAAAGAAAGAGTGTATCCCAGTTGCAATGACAACAGCTTCAATCTCACCA
TGCTTGCATGTTGAGCCAGTGAACACTATGGTCCCCGGTTCTTTTGGTGACAGGAAGGGATTCA
CCAGTGAGAGCTGACTACAAGATGAAGGACAAACAAAAATGTGATCAAATTATTTACACGGATC
AACTAGTCTGACATTCCAGTGATCGACATCTTTCGCATGAACGGCGTGTGGCAATTCATTTTCA
GAGGATCTCCCTCAAGTAGGCACGCATCTGCAGGGACAATGTCACCAAACCTGATGCTGATTAT
ATCCCCCCCAGGTACCAATGTGGAAGCATCAAGCTCTTGCCACTGCTCATCTCTAAGAACCTGG
TAGCAAATCCATGTATACAACAAGATCAGACTAGCACAATGGATTCACTTGCAATTTTTAAATT
TCTGTTCAGAAAAAAAAAACCTTTGTTTTTAGCGCCAACCGGGACATGAGTGCAGCAGCTGCAT
CGCCTGCATTGTTTTCCTTAATGAAGCTGATTGTTGAATTGATAATCGGGAGGCAGACAATTCC
CAGGAAATCCTCCCAATCAGTACCTTGGCT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021