Detail information of Os10g0575200_circ_igg.1


General Information
CircRNA Name Os10g0575200_circ_igg.1
ID in PlantcircBase osa_circ_008151
Alias NA
Organism Oryza sativa
Position chr10: 22870474-22874007  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method CIRCexplorer
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os10g0575200_circ_ig.1
Support reads 1
Tissues shoot, root
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTCAAGCTCTCAATGCTAGCAGTGCCATGTGCAGCAGGACGCAATCTTGTTACTGACCATTCTC
CATGCCGAGTTTCAGCAGCTCCAACAGCCTCGTTTGctttaacagtagtagcaagcgatgtctt
aatgccctatcatctgttctgtccaagagaacagtaatatgtgctgtgccatcgaaaggtccaa
taactttg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTAACAGTAGTAGCAAGCGATGTCTTAATGCCCTATCATCTGTTCTGTCCAAGAGAACAGTA
ATATGTGCTGTGCCATCGAAAGGTCCAATAACTTTGTTATGTTGTTCATAAACTATAGCCATTG
CCCTTGAACAAAGTTCTCTTACAGAAGAACCTCCTCCCCCACCAAAACCATCCAATCTTCCCAA
GTCACACCAATCATCAGATGAACCCAGTTCATCAGGGACTGCACCATCCACAGTAAGACCAATG
TCTGCATCGCACAAGAAGCGGTGATACAGAGCTCTAAAAAAGGCAACAGGATCACGCAGTGGGA
AATCCTGTGCTCGGTAATTGCTTCCACTTTCAAGAAGAAGCCGCAGATAGTATTGGCCCACACA
GACTTCTTTGGACAAGCTAGGGTAGCTAACTGAAAACTCAACATAATTCCATGAAATTCGTGGT
AAGGTTTCACTATCACTGGCATCCTCAGTGACTGAACTTCCAGGGACAATGTCATCAGTTCGTT
CTTTCTCAACATCAAGGCTATGAACTTCAGCTTGCAATGCCTCCCTTAATTCTTGTCTAGTGCG
TTCATTCCATATCAAGTCTGCTCTATTGTGATCAAGACTGAATGCTCTCCAAAATCCATACCAG
TTGCACAGTAGCCTGCCAGATCCAACAGGTGTGTTTTCCACCACAACCTGTGCAGGGACTGAAA
AATCTAAATGTGCAGAGTTAGCAAGGTCACCATTGCCATTGGAGTCCACTAAATAAGCATGTGA
ATCCAGCTGTGGTGCCCCAGTTTGATGATTATTTTCATAGAAGGCCTCAGGTACAAAACCATGT
GGAACTGCCTGAGAAGGATCAATACTTATGCCTGGAGAAGGGGTATATGCAGTAGGGTACTGAT
TAGCATGCCTCTGATGGACATCTGCTCCAAAGGGACCAACATTGGTGTGCCCAAAAAAATCCCC
TTCATTGTTATTTGAGGGCATCCCTTGTTCTGGTACAGCCATACTCTTGCCACCACGGGACCTC
CTCTGCTGAAGTATCCGTTTCTGCCTTCTGCTTAATGGTACTTCATCATACTGGTTCTGAGAAT
CTTCATCTGATCGTGTGTGAAGATAAGCAACAAGTCCAGGGGGAAGTATTCTTGACAGCAAATC
CAGTGCAGGTTGATAAGAATCAGCCCAGAGAGCAACAAGCTGTCGACTAACATCACGTCGCTCA
CCAGCAGGGTAGAAGAAAGCATTCAGTAAATGCCTCAGAAGAGCACCATCCTTCAAGGCAGCAT
CACGCATGGACTCTGCTGCTATTGCATCTTCTTCAGCAATTGTACGCATAATAACAGAAACAGT
CTCCCTCACACTTTCAGCAGGATGGGCAAATAATGCAAACAAACGACGGCGCAAACCAGCGACT
TGACGTAGTAGCTCAACAAATGTAGCATGTTGGGTTGTTTCACCATGGGGTTCACAAAGCATAG
CTTCAAGGACTTCCACAATGGACAATGACAGTAATGGTGAAACTGATAGTGGCCTTAATCTGTT
AACAAGGATTGGAACATAGACTGGTTGTGAGAACAGTACAGACTTTGCATGCATGTAAGTAGCA
TGTGACTCTCCCCTTGTATCCGTTAACATGGATGTATCACCAGGACCACCACCAATTAGCATAG
CCACAAGTCCAGCAGCCTCAGCTGCTACTCCCTCTGAACCATTTCTAAGCAAACCCATTATTCT
CCCTACAGCCACAGGAAATGCCATCACGTGTGCTGACACACTTCTTGATGTGAGGAGCCTCCGT
AAGCATGCGACAAATCCCATTATTGTCGCTGCTGCTTTTGGTGATGGAGGTGGAAGAGGAGGAG
CATCAGCAGGAAGGTTCTGCGGTGTAGCTGGGAGAAGACTAATTAGAGCCATTAGGACCACTTC
AGGTACTTCAATATTGACGGGCACTCCAGTATAGGGTATGCATGCATTGAACTCCCTTATTCTA
CGCCACAATCTGATTTTTGCTCCAGGAACAGTGTCGGATGAAACTACAGCCTCTTTAGCAACAG
TAGCTAAATGTTTTATGTGCATGCTAGCAGCTTCCATATCAACAGTGTGATGGGATATGTGAAC
ACGGGCTACTCCACAGGGTGGATCTATGCGATGACCAGGCATGGTCAACCTTGGTAGCACTGGA
ATGGCACACTGGCTCTGAGTAAGGAGATTAAAAAAGAATGTGAGGTGCCAATGTGAGCATGGTA
ATGGTAGCAAACAAATGCAAGATGAGCATGGCCTAATAAGTAAGCAAGGTGAATATTTTGCTAT
CAAGAAGTCATTATGGTCGCAGTCTTCAGAGCAGCTTTGCTCAAGTACAATTCTGAGTCAGTAT
ACAATCCCCTAAAAGAAACTAAGAAACAGTTATACAATTACATATTACATATAGGAAATAGCAG
GATTAAATAAGCACTCATTACAAAGGGGACATATATGGTGTTTATCTCATTACACTGTTCAGTA
AATTTCTGGCTTTGACAAATTAGATGTGTCATGTAAATTGTACTCTTACATACAACTTCTGAGG
TGTAACTGAAATTGTCGAACAGAAACTATGACTTAAATGCTGACCGGAATATGTGCCTTCATCT
TCTATTTTTTAAAAAAGTGCATCACTAAATCCATGGTGAAGTACAAATAAGACAGTCATGCTCG
CCACACACCATAAATTTGAGCATTAAAATACATCAAGGTGGACCTCAGTCATTTTGTATCTTTG
CAATTCCATATTGAACTCAAGTGATATAAACTGACTAAGATCGAAGTCATACCTGGTTTTGTAA
AACATCAAGAACTGTTGCAAGTAAACTATCACGGGATGTACTTGCATATACCTGAGTGAGGAAA
CAGCCAAGAATTAGGAGGCATTCGTGGTATTGTGCATAGAGACTATGCATGCATACTTACATGA
ATCGGGCAACCATCATTGAATTCGAATGCAAACATCTGCGGTTCTTCTGCAAATCGCACAAGGG
CACTTACTGTTGAGAGAGGTCGAACAATGATAGCCTGAAAAGAAAATATTCAGAGCAAAGAAGT
TAGAACCCTAACATGCTAAAGATAAAGGGAGCAAGGAAGGAGAAGCGGTCTTGCAAAAGAAACT
CCAGAGGAGACAACCATGTAGAGGGTGCAACAAAAGACTTACCCATGGCCCATGGGCCTCATCC
CTTGAAACTACAATTACTAGTAAGTTGATTTGGCAAGGGGTGTAGAAAGTTGATGCATGTTCAT
ATGTAATCGAAATTTTACGAATAGTTTGTATGAGAACAGGTGAAAAGAAGCCAACATCTACCTC
ATAATTCTCCGGTCGTCTTTCGACAAGTGAAGTGTTTGTAAGAACAAGCTGTCGAGAAACGGAA
TCACCATGATCTCCAAGTCCCCCCCTTGGTCCAATACCCAAGCTCAAGCTCTCAATGCTAGCAG
TGCCATGTGCAGCAGGACGCAATCTTGTTACTGACCATTCTCCATGCCGAGTTTCAGCAGCTCC
AACAGCCTCGTTTG
Conservation Information
Conserved circRNAs NA
PMCS 0.367833774
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017