Detail information of Os07g0447800_circ_g.3


General Information
CircRNA Name Os07g0447800_circ_g.3
ID in PlantcircBase osa_circ_033641
Alias NA
Organism Oryza sativa
Position chr7: 15340328-15345085  JBrowse»
Reference genome IRGSP-1.0.38
Type   ei-circRNA
Identification method CIRCexplorer
Parent gene Os07g0447800
Parent gene annotation Alpha-D-phosphohexomutase, alpha/beta/alpha I, II and III domain
containing protein. (Os07t0447800-01)
Parent gene strand +
Alternative splicing Os07g0447800_circ_g.1 Os07g0447800_circ_g.2 Os07g0447800_circ_g.4 Os07g0447800_circ_g.5
Support reads 3
Tissues root
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered Os07t0447800-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTAGAGCAAGCTTCGAAGGGAGAAGTGAGTAATGTCGATTACATGTCAATTTATGCATCCGATC
TTGTGAAAGCAGTTCGTAAATCTGCTGGAAACAAAGcattatcagggaagatcattcaaaatgc
attcttggcacaacatcgcccacaggctagacacagcacaagatatcccagtgacttttgtgcc
ctcgatac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATTATCAGGGAAGATCATTCAAAATGCATTCTTGGCACAACATCGCCCACAGGCTAGACACAG
CACAAGATATCCCAGTGACTTTTGTGCCCTCGATACCCGCAGCGTGCATTCTTTCCAGGAATGT
AGACTAAGACTGGCTGGTACTTCAGCCAAGTGGTTAAATACAATATCAACAGCATGGATTAGCT
CCAGCAAACAAGCATATATTAGCTGCAATGGTGTGTTCTAGGCTCTCATTGATCAGGTTGCTTA
ATGCTCACTAGTGTTACGTTAGGATTTTTTTTTCGCTAACTCATTTTGGTGATTTTATGCCAGA
TTATAGAATCAATACCTTTTTTTTTTAATGTATGTATCAACAAATCTGAAAAGTCACTTACAGT
AACCTTCATTGCAGCTGCTCAAGGTAGCAGCGTTGTCCCATCCTCTGCGAAAGTTGACTTTTTA
AAGCTCCAGAATGGCAGGTATAACAATGTTCACTCTTTCTATGATCTACACCCTCTAGTCTAAC
TATGATATTGCTCTTTCTAAGGTCAAATTATATGGCTGTTTTTCTCTTTAAGCCAATGGTAATG
AGCATATGGTTTCCAACTATGATGTTGTTTGAAAGCACCGTGGTTCTTATGTTAACAGTCAATT
CCATGTCTAGTGCTTCTGTGTTCCTTTTCATTTAACCATCTATTTGCTTTGGTGTTTTGACATG
CATCCCATGTTTTTGCTTTATGTGCTGCTCTTAAACACCTCAATAGCTATTAAATTTCAATCTT
ACTTGTGTCAGAGAAAAAACTCTTTGAGATAAAAAAAAATGTTGTAAGTTGAAACAACATGGAA
AGACCTATAACCATACATCCTCATTTGAGATTATAATTACAAGAATATTGCTTCTGTAAACCGC
AAATCACATAATTTTGAGCGATGCTGTTGCTTAGCTTTTTCTGGTTCAGCTGCAATTGTCAAAA
GGTATCTGGATATCCTGCTGGTGAAATGCATATGACCATTGAATAATTATTGTATGAATACAAG
TTCAACTTTGGCTTTGACCTTTTTTAGAAAGTAATTACATGCGTTTTGGGCTGCATTGCACTTT
ATGGTAAATTATTCGGTGATCTAATGGATAATCTAGTGTTAAAAGTCTCAAACAAAAAAAATCT
GGCAAGAGCTTGTGAGATATTGCTAGTTTCCATCCTATCTTTACCTGCATGGCATGGATTGGTG
CATTAAAAGAACTTTTTCTTCAGCTCTACGCCATTAGGAGAATTTGTCTTTAGTTATACAGCAC
AGTAAAATTCCAAATTGCTAGCTTGTGTGTTACATGTGGTTCATGTCATCCTGTCTATGGACTT
GTTTCTCTTTTGACATCAATTGAAGGAGACCTTGTATCTGTATCTAATTGGGCATATTTTCTCT
ATATTCCTATCTCTTAGCATGATATTTTCCCTGATATAACATCTTCCTCAGACCTAGGACTAAA
GGTTAAAATTCATGTTTGATCAACTCTTGATTTATGTCATGGGCATATGCCTATCATAATTTAT
TTGGAATTGTGTGATTATCGTGAACTTATATTGTTCTTCTTGATATAGCTGGTATGTTGGAATT
AAGTTATCACTTTTGCTAAAAAAGGTGAAGAATCAATTGATCATACAGCTTTGGGATGTTCTAG
ATGGGGTTTATAACAATTTTAGTTAAAGCTAAAGAGTTTCTTGTGCTGCATCCATGATGTGTTA
TTAATCAATTTGCTTTACTCTCTTCTATTTCTCACAGTGATATTCGTGGTGTTGCTGTTGGTGG
GGTCGAAGGCGAGCCCGTAAATCTCACTGAGCCTGTTACTGAAGCAATAGCTTCTGCATTTGCT
GCATGGTTATTAAACAAGAAGAAAGCGGATGGATGGAGACGTTTAAGAATTTCTGTTGGACATG
ATTCTCGAATTTCTGCACATAAATTGCAGGTGGCTCCTGTTCTCCGCTCTTATTTTTATTGAAC
CTTTATTCAAAATAATGCATTGCATGCTTTAAGGAATTAAGCTCACCCCTTATAATTACTAAAA
TCCTGTTCCAACTAGTGATGATTTGGACTATTCTCAGTTTTAACCACTAACCAGTGTTGTTGTT
TTTTATTTTTGCCCAATTATGTTGCCATGTTGAAATTTGGGATTAACAAACTTTTATTTCATAT
GTGGATCAAGAAGCATTCTCGCAGAAAGAAAAAGGATGTGAACAACTTTTCTGTTTTGACATCT
CAAGCATTTCTATGATTGCGGCAAATAGTTGTAATTATATGTATTTTGTCTAAATATAAGGTGG
TACGAAAGACTTATATCCAGATATCTGCTGCTTATTTGCATCTGATGTTGTACTAGCTACAGGT
TGTTTTTCTTTTCTTGAATGCAAATTGACTGAAATCGTTCACTTTATATAGTGATACTGCTCTA
TTTCCATATATTTTGAGAATTGAACTTGGCTTTTGGAGCATACGTCAGTATAATGTATGTTGTT
GGGTAAGGCTGTTGGAGTTGATGGATGGAGGTCAAAATTCACACCTTCTGTGTTTGCACTGTGT
GAGTTGATTGGGAAATGGGAGTAGAGCTCCACACGTGGTGTCCAAATAAAAACTACTCATTCAG
GAGGGAATAGAAAATTGTGCAACAGATAATTCCTTGAAAAGTTGTGCCTTTTGCATGCAGAGTT
TTCTTCTACTACTTACAATCAATTGAATTACCATTTGTACTTTTTTGACAAAAAATATACACAC
TTAATGAGATATTAAAAGGACCTTTGTGCATGCCTAAGTATTTGGATTCGTAGTTCTGGTACAT
ATTAGTCAAGGATGTGTTCTCTGCTACCTTTTATAATTTTTCAATGATGTTATTTGATTTATAT
TAGGCACTGCATTCTGTTGGTAACTGAACAAAAAATTTCCAGTCCTGACTTCTGACAAGTCTAT
ATGTAGTTTGAGCAATGTGATTTGGTCCTTCAATTTTTCTTTTTGCAAGTATTGCTTATTAAAA
AGTGATAATTGTCAGGATGCAGTTACTCTTGGAATTACCACTGCAGGGCATGATGTTTTACAAT
TTGGGTGAGTTGAATATTTAATTTTCTTACATTTATCAAGATCTTCAGTTTTTCCTGTAGCCTT
CAATGCTTAGAATTTAAGTGTGTAATTGATGAAGTCCTCTTGCTACTGTGATTCTTTTTCACTG
AGAAAATCCACACATCAATTCTTACGTAACTACAAGCCTAGGGAACTAATTTGAACTACATCAA
ATGGTTTCCACAATTTCAATCAGTCTTTTCTTCACAACTTTCTTACTTCTCTGCTTAACAAGTA
AAGATCTGCCAAATATTCATTTATGACAATTCATGATGTAGATTGGCTTCAACACCAGCAATGT
TCAACAGTACACTTACAGAAGATGAGATAAATCATTGCCCAGTTGATGGAGCCATAATGATAAC
AGGTACTATTCCCAGTTTAATGTGCAACATTAGCAGGCAAGCATTTCTCAGATGAATACACAAG
AGTTTTGAAACATATACATGGTGTCCAATCTCTTCTCCAAACATACGTAAATTTTATTGATGAT
TCTTTGACTACATAATTGTTCTCTATTGGAAAATATCTCCTTCATTGGGAATTTTTGTTCTTGC
CACACATATGTGCACCATCTTGGTATTGCCCATGAAAAATCATCCTTTCCCATCCTTCTTCCTC
ATGGGAGCTCCTTTCTATTTTCCTCCTGAAATCTATTATCTAAAGCCCCTACTATTTTCCTATT
CCAGCCCCACCCCATCTTATCCGCTCTTCTGTAATAAACTCCTAGGAGACCACTATCACCAAGA
CCTTGTTGCTTGGCACCAAACTCTGCCAATGAAAAGCACAGTAGGGCCAGTGAAGAGGGTGCAC
ATACTCCACTCCCTTTTGAATCCCCTTCGGCGCAAATAGTAAGAATCACTGCCACAGTTCTGAT
GGCCTAGCAGCCAGGGGAGCGGGGAGCCTGTGTGAGGAGGTACTGCTGAGTGGACGGAGCTGGG
TAACTTGGGTTCATACTTCATAGTTACACACAGGTAGCCAGTGGGGTTGCATCTGCTACAACTC
CTCTATGTAAATCGATCCTACTCCATTTATTTGTGTAGTTATTTATTGTTGGGTAGTTTGAGAT
AATCTGGCATCCATGCCTAAGCAGACACACTCAGCTATTCCTTGAAGTGGACTTGGAATTGCTC
CTAAGGATCAAGGATGGTGAGGAAGAGGAAAGAAGACATAGGTGGGAAAAATTCTTACGAGGGG
CAACGTGTAATATCGTAGTAACTTTCAAACATGAAACAGTTTCGATACTGGCAAAATCGAGACA
CATTCTGTGGTAGAACCAGTATGGCACACATTTGTAGTCACTAGAACAAAGTTTTCCCTTTCTT
GTTTTTCCACATGTTCAGTCATTCTTCTTTTGAAATGCCTAATTATGTAGAAACAACTGTTTAA
TTCTCTCTATTTTTAACCAAACAAACTTCTGCCTTTCACAGCAAGTCATCTTCCATACAACCGG
AATGGTCTCAAATTTTTTACAAGTGCCGGTGGTTTGAATAAGGCTGATATCAAAGATATCTTGG
AGCGCGCTTCTAGAATATATGAGGACTCTTCTCATGGTAGCACACAAGAATTAGAGCAAGCTTC
GAAGGGAGAAGTGAGTAATGTCGATTACATGTCAATTTATGCATCCGATCTTGTGAAAGCAGTT
CGTAAATCTGCTGGAAACAAAG
Conservation Information
Conserved circRNAs osi_circ_007152* osi_circ_017018
PMCS 0.103419164
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017