Detail information of AT2G05990_circ_g.6


General Information
CircRNA Name AT2G05990_circ_g.6
ID in PlantcircBase ath_circ_012952
Alias NA
Organism Arabidpsis thaliana
Position chr2: 2324109-2324641  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene AT2G05990
Parent gene annotation Enoyl-[acyl-carrier-protein] reductase
Parent gene strand +
Alternative splicing AT2G05990_circ_g.4 AT2G05990_circ_g.5
Support reads 3
Tissues aerial, whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G05990.1:4
AT2G05990.2:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTCCTTTGGGAAGCCGAGCAGCAAAAGCCATTGGGTTCATAGACACCATGATTGAGTATTCCT
ACAATAATGGGCCTATTCAGAAAACACTGACCGCAGgaggtgcttcaatatctcttacttacat
tgcctctgaaagaatcattcctgggtaaggatggcttcttcacaagttattcaaaggaacaaac
taatgcac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAGGTGCTTCAATATCTCTTACTTACATTGCCTCTGAAAGAATCATTCCTGGGTAAGGATGGCT
TCTTCACAAGTTATTCAAAGGAACAAACTAATGCACACACATAACGATGTCAACACATTCTCAC
AAGTATCTCTTTCATTCTGTGCAGGTATGGTGGAGGTATGAGTTCTGCCAAAGCTGCACTAGAG
AGTGACACACGGGTGAGTTTACAATTCTGTTTCGTAAACTCAAAGATGTATCGGTTAGAAGTCT
CTTAGTCCAAACTGTGTTTTCAACATAGGTGCTTGCATATGAAGCTGGAAGGAAATCAAACATT
AGGGTCAACACCATCTCTGCGGGTAATCCATCTTTCCCTCTTACACGCCTCGTGGTACAAATAA
CACGCCTCGTCTTTTGAAATTATAAAAGAGTACTACTGTTTGGGTTTCAGGTCCTTTGGGAAGC
CGAGCAGCAAAAGCCATTGGGTTCATAGACACCATGATTGAGTATTCCTACAATAATGGGCCTA
TTCAGAAAACACTGACCGCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.166345514
Functional Information
Coding potential Y
Potential coding position 2324274-2324638(+)
Potential amino acid sequence MSSAKAALESDTRVLAYEAGRKSNIRVNTISAGPLGSRAAKAIGFIDTMIEYSYNNGPIQKTLT
AGGASISLTYIASERIIPGYGGGMSSAKAALESDTRVLAYEAGRKSNIRVNTISAGPLGSRAAK
AIGFIDTMIEYSYNNGPIQKTLTAGGASISLTYIASERIIPGYGGGMSSAKAALESDTRVLAYE
AGRKSNIRVNTISAGPLGSRAAKAIGFIDTMIEYSYNNGPIQKTLTAGGASISLTYIASERIIP
GYGGGMSSAKAALESDTRVLAYEAGRKSNIRVNTISAGPLGSRAAKAIGFIDTMIEYSYNNGPI
QKTLTA(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017