Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os06g0658900_circ_g.2 |
ID in PlantcircBase | osa_circ_031831 |
Alias | NA |
Organism | Oryza sativa |
Position | chr6: 27088559-27092256 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, PcircRNA_finder |
Parent gene | Os06g0658900 |
Parent gene annotation |
Homogentisate phytyltransferase (HPT), Tocopherol (vitamin E) bi osynthesis, Plant development, Cold tolerance (Os06t0658900-01) |
Parent gene strand | + |
Alternative splicing | Os06g0658900_circ_g.1 Os06g0658900_circ_g.3 |
Support reads | 1 |
Tissues | pistil |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os06t0658900-01:10 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.109301499 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
27089172-27088840(+) |
Potential amino acid sequence |
MNIYIVGLNQLFDIEIDKVNKPTLPLASGEYSPATGVALVSAFAAMSFGLGWAVGSQPLFLALF ISFILGTAYSINLPFLRWKRSAVVAALCILAVRAVIVQLAFFLHIQTFVFRRPAVFTRPLIFAT AFMTFFSVVIALFKDIPDIEGDRIFGIKSFSVRLGQKKVFWICVGLLEMAYCVAILMGATSACL WSKYATVVGHAILAAILWNRSRSIDLTSKTAITSFYMFIWKITFYHLYVLSIEMVNGQFLCPAK GPKVLPSINVRNSLVGNPPTTGYHIDQHLVPLTLRDNLYNLQLKHMIHQVYGSQYHLLWMHFTG FLGHILS*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |