Detail information of Os06g0658900_circ_g.2


General Information
CircRNA Name Os06g0658900_circ_g.2
ID in PlantcircBase osa_circ_031831
Alias NA
Organism Oryza sativa
Position chr6: 27088559-27092256  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder
Parent gene Os06g0658900
Parent gene annotation Homogentisate phytyltransferase (HPT), Tocopherol (vitamin E) bi
osynthesis, Plant development, Cold tolerance (Os06t0658900-01)
Parent gene strand +
Alternative splicing Os06g0658900_circ_g.1 Os06g0658900_circ_g.3
Support reads 1
Tissues pistil
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os06t0658900-01:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGGACATGCAATCCTTGCGGCAATCCTATGGAACCGCTCACGGTCGATTGATCTGACAAGCAAA
ACTGCAATCACTTCTTTCTACATGTTTATCTGGAAGatcactttctaccacctttatgttctat
ccatagaaatggtaaacggccagtttctttgtccagccaaaggacccaaggtccttccttcgat
caatgtca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATCACTTTCTACCACCTTTATGTTCTATCCATAGAAATGGTAAACGGCCAGTTTCTTTGTCCAG
CCAAAGGACCCAAGGTCCTTCCTTCGATCAATGTCAGAAATTCTTTGGTTGGAAATCCTCCCAC
CACAGGATACCACATCGACCAACATCTAGTTCCGCTGACGCTTCGGGACAACCTCTACAATCTT
CAGCTGAAGCACATGATTCATCAAGTATATGGAAGCCAATATCATCTTCTCTGGATGCATTTTA
CAGGTTTTCTCGGCCACATACTGTCATAGGAACAGTTAAGTGGTGCTGCTATGTTTCAATTTAG
GCGCACTTCAGTGCCCAAGATATTTGAGTGAAGCTAATGTCCTTGTGTTGCGCTTTCCTTTTGT
TCTCTCCTCAACTAAGAGATTTTGCTTGTTTAATCAGGCACTTAGCATAGTCTCAGTTTCGCTG
CTAGCTGTTGAGAATTTGTCCGATGTGTCTCCCTTGTTCCTCACTGGTTTGCTGGAGGTACAAC
TTGAAGCAGCACATTTACTTTATATTCCCCCAAGATGGATAAAAGTTTTCACTACATTTGCTTT
GTTACACTTGTGCAGGCAGTGGTAGCAGCTCTTTTCATGAACATCTATATCGTTGGATTGAATC
AGTTGTTCGACATTGAGATAGATAAGGTACTTTGAATCCACTGTAATCTGTTTGTTAAAAAATG
AATCCACTGTAATCTCAAATGTTAATTTTGTACTAATTGCACTGTCTTTTACTATCTTTATTCC
AAACTGTTTTGGGTGCTAATATTGCTATCTCTTCAGGTTAACAAGCCAACTCTTCCATTAGCAT
CTGGGGAATATTCTCCTGCAACTGGAGTTGCACTTGTATCAGCCTTCGCTGCTATGGTAAATAA
GCTTCTTTGGTCCAGAAAATAAGAAAAACAATCTTCTTGTTATGTTTTTTAATATGCGGGTCAT
GAAATGCTGAAATTGGCTGTTCAAGCACATGGTTTGTTTTGAACATTCCTTTTTAATGTTAGCC
TTTAGAACTAGTGGTTTTCATTTGCGAGAAGATAAAAGTAGCAGAATGGAGATACACCTTTCTT
ATATGGTTGAGCAATTGCACTCCAGAAAGTTTATTTATTACTATGCGCAGATAATTAAATCTAA
TGCAGTTTGTTTGTATTTTCTGCCATTGTGCTCATCTGATCAAGAGCTATAAATAATTTGCTTA
TTTTGGTTCTTAGTCTGTCAGACTGATTCGGAACGTGTTCTATGTGAATATTGCAGAGCTTTGG
CCTTGGATGGGCTGTTGGATCACAGCCTCTGTTCCTGGCTCTTTTCATTAGCTTTATTCTTGGA
ACAGCATATTCGATTAATGTAAGAGACATATATCTTTAGCTCCCTCTTTTGTATTTTTCAAATT
AATAAATAATAGTAGAACCAACTATTTGTAGATTCATAGTATGCCCTTTCATTGATCTTAATAT
CTTATCTTATGTACTGCAATGCAAAACTTTAGTAGGACAACTTATTTCTACTTTTTAAGGAATG
TATTTCCTACTATAAACCAAACCACAAAACGTGGCTCCAGAGGTTTAGTGGGCTGGGCAGATTT
TACTGATACAAAGCTTAACTTGCAGTCAGTCTCCCCTCAAAGTTTACTAGCCAATATCAGCAAT
AAAAGTTTTTCAAAACGTGGCTATGTTAAATATTATCTGGTACTCCTTTCAGTGCATTTTTGGA
CCTCCAATCATCCACATATTTTTACTTCAAAAGAAAAAAAAATGAAATGGATGCTTTGACATGA
ACTTGTTTTTTCAGTTCCTGCATGTTTTTTTTCAACGTTAATGGCTTTTTATGTTGCTAGCATT
TTCCGACACTTTTATTACCAAAAGAGCTGACATTCCATTTTATTCCTCCACAGCTGCCATTCCT
GAGATGGAAGAGATCTGCTGTTGTTGCAGCACTTTGCATATTAGCAGTCCGTGCAGTGATTGTT
CAGCTGGCATTTTTTCTCCACATTCAGGCGAGTCTTCAGTGACAACCTCAAAAATAAGAAAAAA
AATCATTGGTGAAAATCAGTACGTTTGTCAATTGCAGTTGCATTTTCATGTGGAACATTATCTA
AAATTAGATTGTCTGGTCTGGTCAATTTCATTGTGCTGTATTGTTGTTCTTTAGAGATTCCTAA
GTTTTCAATACCTTGACCTTTATCTGCATATTTTTATTAGTACAAACATGCTGCTCTCCTGTGC
TTTCTTTAAAAGAATAGAGACTCCTAAATTTTTCACCTCTACTTTTGCTTGGAATATATCTTAA
AGAATGCTGTTGTATATGTTTGGATAATCGGATCTCTTTCTTATATTTTGAGTTTAATATGCCA
TGGTTGTTGATAGCTGTAATTAGGATCCACCAAATAAGAGTAGACGCTTCTTTTTTGTGAGAAT
TATCTGCACCTTTCTATTATTCCAGGAGCTTTTACCATGGATTATCAGATATTATGATCATATG
AACAGATAATTGCATAGCACATTATCTTATCCTAACGATCTATTCATGCAAATATATCAGACAT
TCGTATTCAGAAGACCAGCAGTCTTTACCAGGCCATTGATTTTTGCAACTGCATTCATGACCTT
TTTCTCCGTTGTAATAGCATTGTTCAAGGTAATATTCTGTACTTATCTGGAAGGTAACTCCCTA
TAAAATCTAGCTGCAGAAGTGGTCGGATTCGCCTTAATAAAATTTGCTGTTTCCGTGTAGGATA
TACCTGATATTGAAGGAGACCGTATTTTTGGTATCAAATCTTTCAGTGTTCGATTAGGTCAAAA
GAAGGTTAGTGCAAAAGTGCACTTCTCAGAGAATTACTCTTCTACTTGTTGATACAAACATCCG
AACAGGTTTTCTGGATTTGTGTTGGTCTGCTCGAGATGGCTTATTGTGTTGCAATATTGATGGG
AGCTACTTCTGCCTGTTTGTGGAGCAAATACGCAACTGTATGGATCACCTCTCTTGCGACTCAG
CAGCATTATTAATGATTAGTTTTGGTTATGAACTATGATTTATTTATTATTTATATATGCCAGG
TGTTTTCGGATTGTCAAATTTACTTTGTTAAGCTAACCAGTATTAGACTAGATTCAATTATGGT
TGATTACCACTGCCAGTTCTTAAAAGAAATAAATTAGTGTCAGTTCTAGCATCTTAAGCTATCT
GCAGAAGGCTCTGTTTGGATGGTCCAATTCTGGCCTGGATTCCAGCTGGTGCCAATAATTATTT
TGGGCCAGGATCGATCCTGCTTGGGTTTGTAGCATCCAAACAAAGCCATAACTGCTGGGCTGGG
CTATGTTTTCTTTACAGAGTATTAAAATTGTTTCGACTTTTGTGTCTGGAAGCCCACGGCTGTG
TGTTTTGTTGAATTTGCCTTCTACCTTTTGTGATAAACTTGTTTACCTGTCCAGATCTTTCCTA
GAATACAGTTCTAGTGATTAACCTGGCACCTGTCAGGCTTTCATGGACTGTGATGTATGCTTCT
TCGAGATTTGTTTATCTTTTTTAAGATAATGTTCCTGGTTTGTTTATGAAGTGGAATTTATATT
CTTTTGAAGGTGGTGGGACATGCAATCCTTGCGGCAATCCTATGGAACCGCTCACGGTCGATTG
ATCTGACAAGCAAAACTGCAATCACTTCTTTCTACATGTTTATCTGGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.109301499
Functional Information
Coding potential Y
Potential coding position 27089172-27088840(+)
Potential amino acid sequence MNIYIVGLNQLFDIEIDKVNKPTLPLASGEYSPATGVALVSAFAAMSFGLGWAVGSQPLFLALF
ISFILGTAYSINLPFLRWKRSAVVAALCILAVRAVIVQLAFFLHIQTFVFRRPAVFTRPLIFAT
AFMTFFSVVIALFKDIPDIEGDRIFGIKSFSVRLGQKKVFWICVGLLEMAYCVAILMGATSACL
WSKYATVVGHAILAAILWNRSRSIDLTSKTAITSFYMFIWKITFYHLYVLSIEMVNGQFLCPAK
GPKVLPSINVRNSLVGNPPTTGYHIDQHLVPLTLRDNLYNLQLKHMIHQVYGSQYHLLWMHFTG
FLGHILS*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017