Detail information of BGIOSGA033266_circ_g.1


General Information
CircRNA Name BGIOSGA033266_circ_g.1
ID in PlantcircBase osi_circ_008602
Alias Chr10:21534418_21535227(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 18648872-18649681  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method find_circ
Parent gene BGIOSGA033266
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-TA
Number of exons covered BGIOSGA033266-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCCTGAATGCAAAGCTGCCCTTCAGGAGGTAACTAGACTTGTCGATGAACAGCTTCGGTTGGAC
AGCCGCTCTGTGAAGGCTTTATTTGGAGCAGAGAAGggtccttgccaagaagttcggcgccgcc
gtggtgacgccggagcaccggtactacggcaagagctccccgttcgagagcctcaccacggaga
acctgagg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTCCTTGCCAAGAAGTTCGGCGCCGCCGTGGTGACGCCGGAGCACCGGTACTACGGCAAGAGC
TCCCCGTTCGAGAGCCTCACCACGGAGAACCTGAGGTTCCTGTCGTCCAAGCAGGCACTGTTCG
ACCTGGCCGCCTTCCGCCAGCATTACCAGGTCAGGATTCAGATCTACGAAATGCATGAAAAATC
TCCCTATTCCCGTGTAAATCGAACTGTTTATGGTCAAATTCATGTGAAATTCCCCTGCGTTTCA
AATGGGGATAAACTATTTAGCACGTGATTTTCTGATCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTGTGGTTTTGTTGCTTTTGTAGGAAATCTTGAATGCTAGGTACAATCGATC
ATCGGGATTTGACAATCCTTGGTTCGTCTTCGGGGTATCGTACTCGGGTGCTCTTAGTGCATGG
TTCAGGCTCAAGTTCCCTCACTTGACATGTGGAAGCCTTGCGAGCTCAGGGGTGGTGCTTGCTG
TGTACAATTTCACTGACTTTGACAAGCAGGTTAGGAATTATGATTTAGGAGTACAGTTTCACCA
GTGCTATGGACAAGGATCATGGTGAGTCATGAACTCATGATCCTTGTATCCATGCTGCTGTTCT
GTGTAATCCACTTTGGATCTGATGAAATTTTTTGTATGGCTACCATTGTGTAGGTAGGGGATTC
AGCTGGCCCTGAATGCAAAGCTGCCCTTCAGGAGGTAACTAGACTTGTCGATGAACAGCTTCGG
TTGGACAGCCGCTCTGTGAAGGCTTTATTTGGAGCAGAGAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021