Plant Circular RNA Database

Detail information of Os02g0104700_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os02g0104700_circ_g.1
					
						ID in PlantcircBase
						osa_circ_012647
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 263685-264713  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							u-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os02g0104700						
					
						Parent gene annotation
						
							Nitric oxide synthase, Chloroplast ribosome biogenesis and/or tr
anslation (Os02t0104700-01);Similar to Nitric oxide associated 1
. (Os02t0104700-02)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							NA						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0104700-01:4
Os02t0104700-02:3

General Information
CircRNA Name	Os02g0104700_circ_g.1
ID in PlantcircBase	osa_circ_012647
Alias	NA
Organism	Oryza sativa
Position	chr2: 263685-264713 JBrowse»
Reference genome	IRGSP-1.0.38
Type	u-circRNA
Identification method	CIRCexplorer
Parent gene	Os02g0104700
Parent gene annotation	Nitric oxide synthase, Chloroplast ribosome biogenesis and/or tr anslation (Os02t0104700-01);Similar to Nitric oxide associated 1 . (Os02t0104700-02)
Parent gene strand	+
Alternative splicing	NA
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0104700-01:4 Os02t0104700-02:3

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GAGTTACATTGACTCCCCCAGCTGGCAAAGAGAAGGCTGAAGGATGGGTTGGTCTGCAGGGTGT
TCGTGAGTTGCAGATAAAATACGAAGAGTCTGATAGaaattatatgatacacctggagtccatc
ttcaccaccggcaagcagcagttatccatgctgatgatctgccttctcttgcaccacaaagtcg
tctaaggg

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 389
Transcript exons: 263685-263798,263885-263959,264068-264157,264604-264713
AAATTATATGATACACCTGGAGTCCATCTTCACCACCGGCAAGCAGCAGTTATCCATGCTGATG
ATCTGCCTTCTCTTGCACCACAAAGTCGTCTAAGGGCACGGTGTTTTCCTGCTAATGATACAGA
TGTTGGATTGAGTGGGAATTCATTATTCTGGGGTGGACTAGTCCGTATTGATGTTGTCAAGGCT
CTTCCACGCACACGACTGACGTTCTATGGACCCAAGAAGCTAAAGATTAATATGGTCCCAACCA
CAGAAGCAGATGAATTTTATGAGAGAGAAGTTGGAGTTACATTGACTCCCCCAGCTGGCAAAGA
GAAGGCTGAAGGATGGGTTGGTCTGCAGGGTGTTCGTGAGTTGCAGATAAAATACGAAGAGTCT
GATAG
Transcript length: 822
Transcript exons: 263685-263798,263898-263959,264068-264713
AAATTATATGATACACCTGGAGTCCATCTTCACCACCGGCAAGCAGCAGTTATCCATGCTGATG
ATCTGCCTTCTCTTGCACCACAAAGTCGTCTAAGGGCACGGTGTTTTCCTATGTTGGATTGAGT
GGGAATTCATTATTCTGGGGTGGACTAGTCCGTATTGATGTTGTCAAGGCTCTTCCACGCACAC
GACTGACGTTCTATGGACCCAAGAAGCTAAAGATTAATATGGTCCCAACCACAGAAGCAGATGA
ATTTTATGAGGTACACCTGTGTTTGCTAATCAGACAACAGTATGCAGCTAATCATTTGTTGCTA
GGTTGAGCTACTTAGAAAGCATCAAGCTACTGGCATACTGTTTTGTTCTCAAAGTTCTATCAAA
TTTAGATTAGTATTTGCAACCCACATACATACCTCTTCCTTTAAATATATATGCTCATATAACT
TCCATGCCTTCCACACCGATGCTCACTTGAAATCTCTATGGATGGTATAATAACTGCATCTATT
TGCCATAGTTCATGCTTTCTATATTTCTGTTCATCTAAGAAAACTGAAGACCATAACATGTAAA
ATAGCCGCTAATTAAACCAGCTTCTGTTCTATGTGCTATGTGAATCAGGTAAATAATAATAGTA
TGTGTTCTGCTGATCAGGGTGGGGTTCGAAATGGCTTTTTTATTTAACGAGTTGTCTATTTCAC
CTTTCCAGAGAGAAGTTGGAGTTACATTGACTCCCCCAGCTGGCAAAGAGAAGGCTGAAGGATG
GGTTGGTCTGCAGGGTGTTCGTGAGTTGCAGATAAAATACGAAGAGTCTGATAG
						
					

						Genomic sequence
						
							AAATTATATGATACACCTGGAGTCCATCTTCACCACCGGCAAGCAGCAGTTATCCATGCTGATG
ATCTGCCTTCTCTTGCACCACAAAGTCGTCTAAGGGCACGGTGTTTTCCTGTATGTATTTGTAT
TCAGTGGCACACATGTTTCTTTCTCAAAACATGCACACTAATCTTTTCTTCAGAATATAATGTT
GTGTTCAGGCTAATGATACAGATGTTGGATTGAGTGGGAATTCATTATTCTGGGGTGGACTAGT
CCGTATTGATGTTGTCAAGGTGCCTAGTTGAGCCCAATTTCAATTCCAAAAATTTTCTACCACT
TCTATTTTTTTCCATTCTGTAGTACTTACCACTGATTATTAATCAATCAATCAATCAATCTAGG
CTCTTCCACGCACACGACTGACGTTCTATGGACCCAAGAAGCTAAAGATTAATATGGTCCCAAC
CACAGAAGCAGATGAATTTTATGAGGTACACCTGTGTTTGCTAATCAGACAACAGTATGCAGCT
AATCATTTGTTGCTAGGTTGAGCTACTTAGAAAGCATCAAGCTACTGGCATACTGTTTTGTTCT
CAAAGTTCTATCAAATTTAGATTAGTATTTGCAACCCACATACATACCTCTTCCTTTAAATATA
TATGCTCATATAACTTCCATGCCTTCCACACCGATGCTCACTTGAAATCTCTATGGATGGTATA
ATAACTGCATCTATTTGCCATAGTTCATGCTTTCTATATTTCTGTTCATCTAAGAAAACTGAAG
ACCATAACATGTAAAATAGCCGCTAATTAAACCAGCTTCTGTTCTATGTGCTATGTGAATCAGG
TAAATAATAATAGTATGTGTTCTGCTGATCAGGGTGGGGTTCGAAATGGCTTTTTTATTTAACG
AGTTGTCTATTTCACCTTTCCAGAGAGAAGTTGGAGTTACATTGACTCCCCCAGCTGGCAAAGA
GAAGGCTGAAGGATGGGTTGGTCTGCAGGGTGTTCGTGAGTTGCAGATAAAATACGAAGAGTCT
GATAG
						
					

			
		

Sequences
Splice junction sequence	GAGTTACATTGACTCCCCCAGCTGGCAAAGAGAAGGCTGAAGGATGGGTTGGTCTGCAGGGTGT TCGTGAGTTGCAGATAAAATACGAAGAGTCTGATAGaaattatatgatacacctggagtccatc ttcaccaccggcaagcagcagttatccatgctgatgatctgccttctcttgcaccacaaagtcg tctaaggg
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 389 Transcript exons: 263685-263798,263885-263959,264068-264157,264604-264713 AAATTATATGATACACCTGGAGTCCATCTTCACCACCGGCAAGCAGCAGTTATCCATGCTGATG ATCTGCCTTCTCTTGCACCACAAAGTCGTCTAAGGGCACGGTGTTTTCCTGCTAATGATACAGA TGTTGGATTGAGTGGGAATTCATTATTCTGGGGTGGACTAGTCCGTATTGATGTTGTCAAGGCT CTTCCACGCACACGACTGACGTTCTATGGACCCAAGAAGCTAAAGATTAATATGGTCCCAACCA CAGAAGCAGATGAATTTTATGAGAGAGAAGTTGGAGTTACATTGACTCCCCCAGCTGGCAAAGA GAAGGCTGAAGGATGGGTTGGTCTGCAGGGTGTTCGTGAGTTGCAGATAAAATACGAAGAGTCT GATAG Transcript length: 822 Transcript exons: 263685-263798,263898-263959,264068-264713 AAATTATATGATACACCTGGAGTCCATCTTCACCACCGGCAAGCAGCAGTTATCCATGCTGATG ATCTGCCTTCTCTTGCACCACAAAGTCGTCTAAGGGCACGGTGTTTTCCTATGTTGGATTGAGT GGGAATTCATTATTCTGGGGTGGACTAGTCCGTATTGATGTTGTCAAGGCTCTTCCACGCACAC GACTGACGTTCTATGGACCCAAGAAGCTAAAGATTAATATGGTCCCAACCACAGAAGCAGATGA ATTTTATGAGGTACACCTGTGTTTGCTAATCAGACAACAGTATGCAGCTAATCATTTGTTGCTA GGTTGAGCTACTTAGAAAGCATCAAGCTACTGGCATACTGTTTTGTTCTCAAAGTTCTATCAAA TTTAGATTAGTATTTGCAACCCACATACATACCTCTTCCTTTAAATATATATGCTCATATAACT TCCATGCCTTCCACACCGATGCTCACTTGAAATCTCTATGGATGGTATAATAACTGCATCTATT TGCCATAGTTCATGCTTTCTATATTTCTGTTCATCTAAGAAAACTGAAGACCATAACATGTAAA ATAGCCGCTAATTAAACCAGCTTCTGTTCTATGTGCTATGTGAATCAGGTAAATAATAATAGTA TGTGTTCTGCTGATCAGGGTGGGGTTCGAAATGGCTTTTTTATTTAACGAGTTGTCTATTTCAC CTTTCCAGAGAGAAGTTGGAGTTACATTGACTCCCCCAGCTGGCAAAGAGAAGGCTGAAGGATG GGTTGGTCTGCAGGGTGTTCGTGAGTTGCAGATAAAATACGAAGAGTCTGATAG
Genomic sequence	AAATTATATGATACACCTGGAGTCCATCTTCACCACCGGCAAGCAGCAGTTATCCATGCTGATG ATCTGCCTTCTCTTGCACCACAAAGTCGTCTAAGGGCACGGTGTTTTCCTGTATGTATTTGTAT TCAGTGGCACACATGTTTCTTTCTCAAAACATGCACACTAATCTTTTCTTCAGAATATAATGTT GTGTTCAGGCTAATGATACAGATGTTGGATTGAGTGGGAATTCATTATTCTGGGGTGGACTAGT CCGTATTGATGTTGTCAAGGTGCCTAGTTGAGCCCAATTTCAATTCCAAAAATTTTCTACCACT TCTATTTTTTTCCATTCTGTAGTACTTACCACTGATTATTAATCAATCAATCAATCAATCTAGG CTCTTCCACGCACACGACTGACGTTCTATGGACCCAAGAAGCTAAAGATTAATATGGTCCCAAC CACAGAAGCAGATGAATTTTATGAGGTACACCTGTGTTTGCTAATCAGACAACAGTATGCAGCT AATCATTTGTTGCTAGGTTGAGCTACTTAGAAAGCATCAAGCTACTGGCATACTGTTTTGTTCT CAAAGTTCTATCAAATTTAGATTAGTATTTGCAACCCACATACATACCTCTTCCTTTAAATATA TATGCTCATATAACTTCCATGCCTTCCACACCGATGCTCACTTGAAATCTCTATGGATGGTATA ATAACTGCATCTATTTGCCATAGTTCATGCTTTCTATATTTCTGTTCATCTAAGAAAACTGAAG ACCATAACATGTAAAATAGCCGCTAATTAAACCAGCTTCTGTTCTATGTGCTATGTGAATCAGG TAAATAATAATAGTATGTGTTCTGCTGATCAGGGTGGGGTTCGAAATGGCTTTTTTATTTAACG AGTTGTCTATTTCACCTTTCCAGAGAGAAGTTGGAGTTACATTGACTCCCCCAGCTGGCAAAGA GAAGGCTGAAGGATGGGTTGGTCTGCAGGGTGTTCGTGAGTTGCAGATAAAATACGAAGAGTCT GATAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.506035431

Conservation Information
Conserved circRNAs	NA
PMCS	0.506035431

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							264563-263778(+)
						
						Potential amino acid sequence
						
							MAFLFNELSISPFQREVGVTLTPPAGKEKAEGWVGLQGVRELQIKYEESDRNYMIHLESIFTTG
KQQLSMLMICLLLHHKVV*(+)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	264563-263778(+)
Potential amino acid sequence	MAFLFNELSISPFQREVGVTLTPPAGKEKAEGWVGLQGVRELQIKYEESDRNYMIHLESIFTTG KQQLSMLMICLLLHHKVV*(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os02g0104700_circ_g.1

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