Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Os03g0213150_circ_g.1 |
| ID in PlantcircBase | osa_circ_018498 |
| Alias | NA |
| Organism | Oryza sativa |
| Position | chr3: 5897112-5898791 JBrowse» |
| Reference genome | IRGSP-1.0.38 |
| Type | ui-circRNA |
| Identification method | CIRCexplorer |
| Parent gene | Os03g0213150 |
| Parent gene annotation |
Hypothetical protein. (Os03t0213150-00) |
| Parent gene strand | - |
| Alternative splicing | Os03g0213150_circ_g.2 |
| Support reads | 1 |
| Tissues | shoot |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AG |
| Number of exons covered | Os03t0213100-01:5 Os03t0213100-02:5 Os03t0213150-00:5 Os03t0213100-01:5 Os03t0213100-02:5 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.546009544 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
5897119-5898788(+) 5898665-5897217(+) 5897146-5898764(-) |
| Potential amino acid sequence |
MAGGFRVLHLVRPFLAFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPF YWMRVILASNRGTVMELGITPIVTSGMVMQLLVGSKIIEVDNSVREDRALLNGAQKLLGILIAI GEAVAYVLSGMYGSVSQLGTGNAILIILQLFFAGIIVICLDELLQKGYGLGSGISLFIATNICE NIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTDKVRALREAFYRQNLPNVTNLLATVLVFL IVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILHSALITNLYFISQLLYRRYSGNFL VNLIGKWKESEYSGHSVPVGGLAYYVTAPSSLADVLANPFHALFYVVFMLSACALFSKTWIEVS GSSAKDVAKQLKEKMAGGFRVLHLVRPFLAFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQL PLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGMVMQLLVGSKIIEVDNSVREDRAL LNGAQKLLGILIAIGEAVAYVLSGMYGSVSQLGTGNAILIILQLFFAGIIVICLDELLQKGYGL GSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTDKVRALREAFYRQNL PNVTNLLATVLVFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILHSALITNLYF ISQLLYRRYSGNFLVNLIGKWKESEYSGHSVPVGGLAYYVTAPSSLADVLANPFHALFYVVFML SACALFSKTWIEVSGSSAKDVAKQLKEKMAGGFRVLHLVRPFLAFLPEVQSADRKIPFREKVIY TVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGMVMQLLVGSK IIEVDNSVREDRALLNGAQKLLGILIAIGEAVAYVLSGMYGSVSQLGTGNAILIILQLFFAGII VICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTD KVRALREAFYRQNLPNVTNLLATVLVFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNM PIILHSALITNLYFISQLLYRRYSGNFLVNLIGKWKESEYSGHSVPVGGLAYYVTAPSSLADVL ANPFHALFYVVFMLSACALFSKTWIEVSGSSAKDVAKQLKEKMAGGFRVLHLVRPFLAFLPEVQ SADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPI VTSGMVMQLLVGSKIIEVDNSVREDRALLNGAQKLLGILIAIGEAVAYVLSGMYGSVSQLGTGN AILIILQLFFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEG AVIALFHLLITRTDKVRALREAFYRQNLPNVTNLLATVLVFLIVIYFQGFRVVLPVRSKNARGQ QGSYPIKLFYTSNMPIILHSALITNLYFISQLLYRRYSGNFLVNLIGKWKESEYSGHSVPVGGL AYYVTAPSSLADVLANPFHALFYVVFMLSACALFSKTWIEVSGSSAKDVAKQLK(+) MFSQIHSMHCSMWSSCCQLVLSSQRHGLKYLVHQQRMLLNSSRKRWLVALGYCILSGLFWLSCL KYRVLIGKYHLEKK*(+) MQYPKATSHLFLELFSNILC*(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Chu et al., 2017 |