Detail information of Os03g0213150_circ_g.1


General Information
CircRNA Name Os03g0213150_circ_g.1
ID in PlantcircBase osa_circ_018498
Alias NA
Organism Oryza sativa
Position chr3: 5897112-5898791  JBrowse»
Reference genome IRGSP-1.0.38
Type   ui-circRNA
Identification method CIRCexplorer
Parent gene Os03g0213150
Parent gene annotation Hypothetical protein. (Os03t0213150-00)
Parent gene strand -
Alternative splicing Os03g0213150_circ_g.2
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0213100-01:5
Os03t0213100-02:5
Os03t0213150-00:5
Os03t0213100-01:5
Os03t0213100-02:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTTCTATGTGGTCTTCATGCTGTCAGCTTGTGCTCTCTTCTCAAAGACATGGATTGAAGTATCT
GGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgaaaagatggctggtggctttagggtat
tgcatcttgtcaggccttttctggctttcctgcctgaagtacagagtgctgataggaaaatacc
atttagag
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1194
Transcript exons: 5897112-5897461,5897660-5897887,5897966-5898320,5898405-
5898529,5898656-5898791
GAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTGGCTTTCCTGCCTG
AAGTACAGAGTGCTGATAGGAAAATACCATTTAGAGAAAAAGTGATCTACACTGTTATTTCCCT
ATTCATTTTCCTGGTATGCAGCCAGCTACCACTGTATGGCATCCATTCAACTACTGGAGCTGAT
CCTTTCTACTGGATGCGTGTTATCCTTGCATCAAACCGTGGTACTGTTATGGAGCTGGGTATCA
CTCCAATTGTGACATCTGGCATGGTAATGCAACTTCTAGTGGGATCAAAGATCATTGAAGTTGA
CAACAGTGTGAGAGAGGATCGTGCTCTGCTGAATGGCGCACAAAAGTTACTTGGTATCCTGATT
GCAATTGGGGAAGCTGTGGCATATGTTTTGTCTGGAATGTATGGCAGTGTAAGCCAGCTTGGAA
CTGGAAATGCCATCCTCATTATACTTCAGCTTTTCTTTGCTGGCATCATTGTCATCTGTCTGGA
TGAACTTCTCCAGAAAGGTTATGGTTTGGGTTCTGGCATTTCTCTCTTTATTGCTACCAATATC
TGTGAGAATATCATCTGGAAGGCATTTAGCCCCACAACTATCAACAGTGGCCGTGGTGCTGAGT
TCGAGGGGGCTGTCATTGCATTGTTCCATCTGTTGATTACTAGAACCGACAAAGTCCGTGCCTT
GCGCGAGGCTTTCTACCGCCAGAATCTTCCAAATGTGACCAACTTGCTTGCTACTGTTTTAGTC
TTCCTCATAGTTATCTACTTCCAAGGCTTCCGTGTTGTGCTACCAGTGAGATCCAAGAATGCCC
GCGGTCAACAAGGCTCATACCCAATTAAGCTGTTCTACACTTCAAACATGCCCATCATTCTGCA
TTCTGCACTGATTACCAACCTCTATTTCATATCCCAGCTTCTCTACAGGAGGTACAGTGGAAAT
TTCCTAGTCAACCTTATTGGGAAATGGAAGGAATCTGAGTACTCTGGCCATTCTGTTCCTGTTG
GTGGTCTTGCTTACTATGTAACTGCTCCATCAAGTTTAGCTGATGTTCTCGCAAATCCATTCCA
TGCACTGTTCTATGTGGTCTTCATGCTGTCAGCTTGTGCTCTCTTCTCAAAGACATGGATTGAA
GTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAG

Genomic sequence GAAAAGATGGCTGGTGGCTTTAGGGTATTGCATCTTGTCAGGCCTTTTCTGGCTTTCCTGCCTG
AAGTACAGAGTGCTGATAGGAAAATACCATTTAGAGAAAAAGTGATCTACACTGTTATTTCCCT
ATTCATTTTCCTGGTATGCAGCCAGCTACCACTGTATGGCATCCATTCAACTACTGGAGCTGAT
CCTTTCTACTGGATGCGTGTTATCCTTGCATCAAACCGTGGTACTGTTATGGAGCTGGGTATCA
CTCCAATTGTGACATCTGGCATGGTAATGCAACTTCTAGTGGGATCAAAGATCATTGAAGTTGA
CAACAGTGTGAGAGAGGATCGTGCTCTGCTGTAAGTATTATGAGATTAACACTATGTTCTTTAC
TATTACCTGAACCTTGAAACTTAGTGCCTTATTTACTATGGTCTGCTGTTTGTAGCCCACCATA
TTTCAGCGAATGGCTATTGATTAAATGCTACTACGTATCTGATTCATGTTTACCATGTCTTTTG
ATTATATTTGTTACGCTAATGTACTTTTTTACCCAGGAATGGCGCACAAAAGTTACTTGGTATC
CTGATTGCAATTGGGGAAGCTGTGGCATATGTTTTGTCTGGAATGTATGGCAGTGTAAGCCAGC
TTGGAACTGGAAATGCCATCCTCATTATACTTCAGCTTTTCTTTGCTGGCATCATTGTCATCTG
TCTGGATGAACTTCTCCAGAAAGGTTATGGTTTGGGTTCTGGCATTTCTCTCTTTATTGCTACC
AATATCTGGTGAGCACATTGAACTTTGTTCTTCTCTATTGTTGACATTTTCTATTCAACTTGAC
TTATGGAAATCTTTCTCTGTAGTGAGAATATCATCTGGAAGGCATTTAGCCCCACAACTATCAA
CAGTGGCCGTGGTGCTGAGTTCGAGGGGGCTGTCATTGCATTGTTCCATCTGTTGATTACTAGA
ACCGACAAAGTCCGTGCCTTGCGCGAGGCTTTCTACCGCCAGAATCTTCCAAATGTGACCAACT
TGCTTGCTACTGTTTTAGTCTTCCTCATAGTTATCTACTTCCAAGGCTTCCGTGTTGTGCTACC
AGTGAGATCCAAGAATGCCCGCGGTCAACAAGGCTCATACCCAATTAAGCTGTTCTACACTTCA
AACATGCCCATCATTCTGCATTCTGCACTGATTACCAACCTCTATTTCATATCCCAGGTCTGAA
CTTCAATTCCACTGCTTTAGCAAGATAAATCTTTAATGTTTGTGTTTAGCATTAACATGTTTGT
ATTGCTTTGGCAGCTTCTCTACAGGAGGTACAGTGGAAATTTCCTAGTCAACCTTATTGGGAAA
TGGAAGGAATCTGAGTACTCTGGCCATTCTGTTCCTGTTGGTGGTCTTGCTTACTATGTAACTG
CTCCATCAAGGTGAAGAATCAATTTCATCAATGAGGCCTTCATCTCTTTGTGCTCGCAATTTTA
GTTTCTGTTACTGTTTGATAAAATTTACTTTTAATTATACTTACCTTGGCATATGCACTGGAAA
TGTTGCAGTTTAGCTGATGTTCTCGCAAATCCATTCCATGCACTGTTCTATGTGGTCTTCATGC
TGTCAGCTTGTGCTCTCTTCTCAAAGACATGGATTGAAGTATCTGGTTCATCAGCAAAGGATGT
TGCTAAACAGCTCAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.546009544
Functional Information
Coding potential Y
Potential coding position 5897119-5898788(+)
5898665-5897217(+)
5897146-5898764(-)
Potential amino acid sequence MAGGFRVLHLVRPFLAFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPF
YWMRVILASNRGTVMELGITPIVTSGMVMQLLVGSKIIEVDNSVREDRALLNGAQKLLGILIAI
GEAVAYVLSGMYGSVSQLGTGNAILIILQLFFAGIIVICLDELLQKGYGLGSGISLFIATNICE
NIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTDKVRALREAFYRQNLPNVTNLLATVLVFL
IVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILHSALITNLYFISQLLYRRYSGNFL
VNLIGKWKESEYSGHSVPVGGLAYYVTAPSSLADVLANPFHALFYVVFMLSACALFSKTWIEVS
GSSAKDVAKQLKEKMAGGFRVLHLVRPFLAFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQL
PLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGMVMQLLVGSKIIEVDNSVREDRAL
LNGAQKLLGILIAIGEAVAYVLSGMYGSVSQLGTGNAILIILQLFFAGIIVICLDELLQKGYGL
GSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTDKVRALREAFYRQNL
PNVTNLLATVLVFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILHSALITNLYF
ISQLLYRRYSGNFLVNLIGKWKESEYSGHSVPVGGLAYYVTAPSSLADVLANPFHALFYVVFML
SACALFSKTWIEVSGSSAKDVAKQLKEKMAGGFRVLHLVRPFLAFLPEVQSADRKIPFREKVIY
TVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGMVMQLLVGSK
IIEVDNSVREDRALLNGAQKLLGILIAIGEAVAYVLSGMYGSVSQLGTGNAILIILQLFFAGII
VICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTD
KVRALREAFYRQNLPNVTNLLATVLVFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNM
PIILHSALITNLYFISQLLYRRYSGNFLVNLIGKWKESEYSGHSVPVGGLAYYVTAPSSLADVL
ANPFHALFYVVFMLSACALFSKTWIEVSGSSAKDVAKQLKEKMAGGFRVLHLVRPFLAFLPEVQ
SADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPI
VTSGMVMQLLVGSKIIEVDNSVREDRALLNGAQKLLGILIAIGEAVAYVLSGMYGSVSQLGTGN
AILIILQLFFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEG
AVIALFHLLITRTDKVRALREAFYRQNLPNVTNLLATVLVFLIVIYFQGFRVVLPVRSKNARGQ
QGSYPIKLFYTSNMPIILHSALITNLYFISQLLYRRYSGNFLVNLIGKWKESEYSGHSVPVGGL
AYYVTAPSSLADVLANPFHALFYVVFMLSACALFSKTWIEVSGSSAKDVAKQLK(+)
MFSQIHSMHCSMWSSCCQLVLSSQRHGLKYLVHQQRMLLNSSRKRWLVALGYCILSGLFWLSCL
KYRVLIGKYHLEKK*(+)
MQYPKATSHLFLELFSNILC*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017