Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G23180_circ_g.3 |
ID in PlantcircBase | ath_circ_004003 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 8218148-8218809 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, PcircRNA_finder |
Parent gene | AT1G23180 |
Parent gene annotation |
ARM repeat superfamily protein |
Parent gene strand | + |
Alternative splicing | AT1G23180_circ_g.4 |
Support reads | 1/10 |
Tissues | whole_plant/seedlings |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G23180.2:4 AT1G23180.1:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.126312588 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to heat stress |
Other Information | |
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References | Chu et al., 2017;Pan et al., 2017 |